Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

29641686 .. 29645624

Gene Structure 3939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGACTGCTAGTGATCAGCAACTGAAATTGTATTCCTACTACAGGAGCTCTTGCTCTTACCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTATAGTCCTGCGTTTAGAAAGCTCAATCCGATCGGCTATGTACCGGTGCTTGTGGATGGGGACTTAGCTGTTTCCGATTCATTTGCCATTTTATTGCTTCTTCTCATGTTCCACAGTATTTGGAAGAAAAGTATCCACAACATCCGTTGTTGCATAAAGACCATTAACTTCCAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCGTCAGAATCTGGCAGTATTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCGAAAATTGAATGGGCTAAAGTTCATATTGAGAAAGGTTTTGCAGCACTTGAAGATCTACTGAGAAACTATGCAGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGCAGATTTGTTTTTGGCGCCCCAGATTCATGCAGCTTTTACAAGGTTCAATCTAGACATGACCCGGTTCCCCCTTTTGTCCAGGCTGCATGAGGCATACAATGAGATACCAGCATTCGTAGATGCTAGGCCAGATAAGCAGCCGGATGCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

220

Amino Acids

25.01

Weight (kDa)

8.8

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 77	7.9e-15	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	11 - 80	1.3e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	17 - 78	3.5e-13	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	133 - 206	2.1e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	139 - 196	2.9e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	2 cut(s)	107, 180
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	127, 367, 407, 449, 553
AjnI	CCWGG	2 cut(s)	309, 584
AluBI	AGCT	5 cut(s)	51, 113, 160, 206, 539
AluI	AGCT	5 cut(s)	51, 113, 160, 206, 539
Alw21I	GWGCWC	1 cut(s)	53
AlwNI	CAGNNNCTG	2 cut(s)	25, 355
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	5 cut(s)	314, 440, 536, 589, 643
AsiGI	ACCGGT	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	53, 96
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	301, 452, 548, 576, 655
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	311, 586
BciVI	GTATCC	1 cut(s)	281
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	568
BfaI	CTAG	3 cut(s)	12, 557, 630
BfmI	CTRYAG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	5 cut(s)	315, 441, 537, 590, 644
BlsI	GCNGC	5 cut(s)	316, 442, 538, 591, 645
Bme1390I	CCNGG	3 cut(s)	311, 568, 586
BmiI	GGNNCC	2 cut(s)	522, 572
BmrFI	CCNGG	3 cut(s)	311, 568, 586
BmsI	GCATC	3 cut(s)	385, 616, 640
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	568
BsaHI	GRCGYC	1 cut(s)	521
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	311, 586
BseGI	GGATG	3 cut(s)	199, 279, 655
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	301, 452, 548, 576, 655
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	634
BshNI	GGYRCC	1 cut(s)	520
BshTI	ACCGGT	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	182, 568, 647
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	634
Bsp1286I	GDGCHC	2 cut(s)	53, 96
Bsp143I	GATC	3 cut(s)	16, 168, 451
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	522, 572
BspT107I	GGYRCC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	3 cut(s)	16, 168, 451
BssNI	GRCGYC	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	311, 586
Bst4CI	ACNGT	3 cut(s)	65, 138, 254
BstACI	GRCGYC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	202, 458
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	199, 279, 655
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	3 cut(s)	19, 171, 454
BstMBI	GATC	3 cut(s)	16, 168, 451
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	2 cut(s)	311, 586
BstSCI	CCNGG	3 cut(s)	309, 566, 584
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	5 cut(s)	301, 452, 548, 576, 655
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	199, 279, 655
CaiI	CAGNNNCTG	2 cut(s)	25, 355
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	106, 179
CspAI	ACCGGT	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	239, 274
CviAII	CATG	4 cut(s)	244, 533, 562, 593
CviQI	GTAC	2 cut(s)	106, 179
DdeI	CTNAG	2 cut(s)	202, 458
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	3 cut(s)	18, 170, 453
DpnII	GATC	3 cut(s)	16, 168, 451
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 96
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	309, 584
EcoT38I	GRGCYC	2 cut(s)	53, 96
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
FaeI	CATG	4 cut(s)	247, 536, 565, 596
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	243, 532, 561, 592
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	315, 441, 537, 590, 644
FokI	GGATG	2 cut(s)	206, 266
FriOI	GRGCYC	2 cut(s)	53, 96
Fsp4HI	GCNGC	5 cut(s)	315, 441, 537, 590, 644
FspBI	CTAG	3 cut(s)	12, 557, 630
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	5 cut(s)	315, 441, 537, 590, 644
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	3 cut(s)	182, 568, 647
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	247, 536, 565, 596
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HinfI	GANTC	3 cut(s)	215, 352, 529
HpaII	CCGG	3 cut(s)	182, 568, 647
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	71, 168, 214, 351
Hpy188III	TCNNGA	2 cut(s)	392, 557
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	65, 138, 254
HpyCH4V	TGCA	8 cut(s)	291, 317, 440, 470, 482, 506, 536, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	2 cut(s)	202, 458
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	4 cut(s)	247, 536, 565, 596
HspAI	GCGC	1 cut(s)	521
KasI	GGCGCC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 168, 451
LmnI	GCTCC	2 cut(s)	48, 658
Lsp1109I	GCAGC	5 cut(s)	301, 452, 548, 576, 655
LweI	GCATC	3 cut(s)	385, 616, 640
MaeI	CTAG	3 cut(s)	12, 557, 630
MalI	GATC	3 cut(s)	18, 170, 453
MboI	GATC	3 cut(s)	16, 168, 451
MboII	GAAGA	5 cut(s)	230, 274, 389, 461, 486
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	53, 96
MluCI	AATT	4 cut(s)	29, 72, 367, 402
Mly113I	GGCGCC	1 cut(s)	521
MnlI	CCTC	3 cut(s)	89, 95, 589
MseI	TTAA	1 cut(s)	303
MspI	CCGG	3 cut(s)	182, 568, 647
MspR9I	CCNGG	3 cut(s)	311, 568, 586
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	311, 586
MwoI	GCNNNNNNNGC	1 cut(s)	640
NarI	GGCGCC	1 cut(s)	521
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	16, 168, 451
NlaIII	CATG	4 cut(s)	247, 536, 565, 596
NlaIV	GGNNCC	2 cut(s)	522, 572
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	215, 352, 529
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	316, 442, 538, 591, 645
Ple19I	CGATCG	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	309, 584
PspGI	CCWGG	2 cut(s)	309, 584
PspN4I	GGNNCC	2 cut(s)	522, 572
PstNI	CAGNNNCTG	2 cut(s)	25, 355
PsuI	RGATCY	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	107, 180
RsaNI	GTAC	2 cut(s)	106, 179
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	315, 441, 537, 590, 644
Sau3AI	GATC	3 cut(s)	16, 168, 451
ScrFI	CCNGG	3 cut(s)	311, 568, 586
SduI	GDGCHC	2 cut(s)	53, 96
SetI	ASST	8 cut(s)	53, 87, 115, 162, 208, 436, 541, 551
SfaNI	GCATC	3 cut(s)	385, 616, 640
SfcI	CTRYAG	1 cut(s)	43
SfoI	GGCGCC	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	29, 72, 367, 402
SspDI	GGCGCC	1 cut(s)	520
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	3 cut(s)	12, 557, 630
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	309, 566, 584
TaaI	ACNGT	3 cut(s)	65, 138, 254
TasI	AATT	4 cut(s)	29, 72, 367, 402
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	215, 352, 529
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	5 cut(s)	314, 440, 536, 589, 643
TspDTI	ATGAA	5 cut(s)	207, 410, 507, 521, 648
TspGWI	ACGGA	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	556
XspI	CTAG	3 cut(s)	12, 557, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.