Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

14523442 .. 14525191

Gene Structure 1750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0175800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGACCCAAATACTCCTCCCACTAACTTGCGCCAAATAACAATAGACCAACCCACACCGACCCAGTTCACCTCTGACTTTCCTCCTCCTCCTCCTCCTCCTAAACTACACCAGCCTCCTCTTCCAGCTCCATCACATTCTCTTGCTCTTCTTCCTCTTGACCACCCGTGTGGAACACCAACTATACCCATAATACCCCCCACTTCTGAAGCAACAGCAGTACAGCAGCTACAGCTTCAACCACCCAAGGAGGCAACAGCACCGCAGGGAAAGACTCCCATGGCCTCGAGCTCTTCTGGCAAGCACCCGAGGTACCGGGGAATCAGAAGCCGGGGAGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGCAAGACCAAGCGAATATGGCTCGGGACTTTCCCAACTCCTGAGATGGCTGCAGCCGCCTATGACGTGGCGGCACTGGCTCTGAAACGTGAGGATGCTGTTCTCAACTTTCCTAGTTTTATCAAGTCGTATCCAGTACCGGCATCCATGTCTGCCCTGGACATTCGTGCTGCCGCCGCTGCAGCCGCTACTGCAGTAGGCCCGGCAACGCTGAAAACGAGTGGCTCCACGGAGACTTCAAATGTTGGACAACAACAGAAAGAGTATGATGATATGTTGAGTATTAATAACAGGACTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGGATGCCGAATTTGCTGGTGGACATGGCTGAGGGAATGCTGGTTTCTCCGCCGAGGATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGAATTCAGAAGGAGGAGAGAGTCTCTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

281

Amino Acids

30.14

Weight (kDa)

5.18

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 152	2.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	2 cut(s)	363, 370
AcsI	RAATTY	2 cut(s)	724, 808
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	3 cut(s)	225, 317, 507
AgsI	TTSAA	2 cut(s)	242, 609
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AleI	CACNNNNGTG	1 cut(s)	171
AluBI	AGCT	4 cut(s)	131, 232, 238, 294
AluI	AGCT	4 cut(s)	131, 232, 238, 294
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	596, 833
Ama87I	CYCGRG	3 cut(s)	289, 310, 392
AoxI	GGCC	2 cut(s)	285, 568
ApeKI	GCWGC	6 cut(s)	229, 419, 422, 539, 548, 551
ApoI	RAATTY	2 cut(s)	724, 808
AseI	ATTAAT	1 cut(s)	654
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	36, 372
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	3 cut(s)	320, 335, 572
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	3 cut(s)	289, 310, 392
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	6 cut(s)	241, 406, 434, 526, 535, 563
BccI	CCATC	2 cut(s)	142, 409
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	3 cut(s)	320, 335, 572
BcoDI	GTCTC	2 cut(s)	596, 833
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	4 cut(s)	233, 420, 549, 561
BfuI	GTATCC	1 cut(s)	510
Bme1390I	CCNGG	4 cut(s)	320, 335, 527, 572
BmeT110I	CYCGRG	3 cut(s)	289, 310, 392
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	317, 595
BmrFI	CCNGG	4 cut(s)	320, 335, 527, 572
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	454, 521, 708
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	813, 845
Bpu10I	CCTNAGC	1 cut(s)	744
BpuMI	CCSGG	3 cut(s)	320, 335, 572
BsaHI	GRCGYC	1 cut(s)	671
BsaJI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	67, 450, 503
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
BseGI	GGATG	3 cut(s)	469, 512, 723
BseMII	CTCAG	2 cut(s)	402, 735
BseNI	ACTGG	3 cut(s)	67, 450, 503
BseRI	GAGGAG	8 cut(s)	9, 78, 81, 84, 87, 90, 111, 834
BseXI	GCAGC	6 cut(s)	241, 406, 434, 526, 535, 563
Bsh1236I	CGCG	2 cut(s)	363, 370
BshFI	GGCC	2 cut(s)	287, 570
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	3 cut(s)	289, 310, 392
BsiSI	CCGG	5 cut(s)	319, 334, 509, 572, 803
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	596, 833
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	287, 570
BsoBI	CYCGRG	3 cut(s)	289, 310, 392
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	2 cut(s)	287, 570
BspCNI	CTCAG	2 cut(s)	403, 736
BspFNI	CGCG	2 cut(s)	363, 370
BspLI	GGNNCC	2 cut(s)	317, 595
BspMAI	CTGCAG	3 cut(s)	424, 553, 565
BspQI	GCTCTTC	2 cut(s)	156, 301
BspT107I	GGYRCC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	67, 450, 503
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
BssNI	GRCGYC	1 cut(s)	671
BssT1I	CCWWGG	2 cut(s)	249, 282
Bst2UI	CCWGG	1 cut(s)	527
Bst6I	CTCTTC	4 cut(s)	129, 156, 301, 699
BstACI	GRCGYC	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	305, 365
BstDEI	CTNAG	2 cut(s)	411, 744
BstDSI	CCRYGG	2 cut(s)	282, 597
BstF5I	GGATG	3 cut(s)	469, 512, 723
BstFNI	CGCG	2 cut(s)	363, 370
BstHHI	GCGC	2 cut(s)	36, 372
BstMAI	GTCTC	2 cut(s)	596, 833
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	318, 333, 525, 570
BstSFI	CTRYAG	4 cut(s)	233, 420, 549, 561
BstUI	CGCG	2 cut(s)	363, 370
BstV1I	GCAGC	6 cut(s)	241, 406, 434, 526, 535, 563
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	287, 570
BtgI	CCRYGG	2 cut(s)	282, 597
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	469, 512, 723
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	305, 365
CfoI	GCGC	2 cut(s)	36, 372
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	569
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	3 cut(s)	224, 316, 506
CviAII	CATG	3 cut(s)	283, 517, 739
CviQI	GTAC	3 cut(s)	224, 316, 506
DdeI	CTNAG	2 cut(s)	411, 744
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
Eam1104I	CTCTTC	4 cut(s)	129, 156, 301, 699
EarI	CTCTTC	4 cut(s)	129, 156, 301, 699
EciI	GGCGGA	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	249, 282
Eco24I	GRGCYC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	3 cut(s)	289, 310, 392
EcoICRI	GAGCTC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	249, 282
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	249, 282
FaeI	CATG	3 cut(s)	286, 520, 742
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	282, 516, 738
FokI	GGATG	3 cut(s)	476, 499, 730
FriOI	GRGCYC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	35, 371
HaeIII	GGCC	2 cut(s)	287, 570
HapII	CCGG	5 cut(s)	319, 334, 509, 572, 803
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	2 cut(s)	36, 372
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	286, 520, 742
Hin6I	GCGC	2 cut(s)	34, 370
HinP1I	GCGC	2 cut(s)	34, 370
HinfI	GANTC	4 cut(s)	277, 324, 797, 826
HpaII	CCGG	5 cut(s)	319, 334, 509, 572, 803
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	72, 736
Hpy188I	TCNGA	7 cut(s)	79, 211, 329, 355, 453, 790, 814
Hpy188III	TCNNGA	4 cut(s)	161, 394, 410, 832
Hpy8I	GTNNAC	2 cut(s)	72, 736
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	795, 809
HpyCH4IV	ACGT	2 cut(s)	435, 457
HpyCH4V	TGCA	3 cut(s)	422, 551, 563
HpyF3I	CTNAG	2 cut(s)	411, 744
HpySE526I	ACGT	2 cut(s)	435, 457
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	3 cut(s)	286, 520, 742
HspAI	GCGC	2 cut(s)	34, 370
KpnI	GGTACC	1 cut(s)	319
LguI	GCTCTTC	2 cut(s)	156, 301
LmnI	GCTCC	3 cut(s)	136, 599, 683
Lsp1109I	GCAGC	6 cut(s)	241, 406, 434, 526, 535, 563
LweI	GCATC	3 cut(s)	454, 521, 708
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	435, 457
MboII	GAAGA	5 cut(s)	116, 143, 146, 288, 716
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	724, 808
MlyI	GAGTC	3 cut(s)	271, 791, 835
MmeI	TCCRAC	2 cut(s)	333, 595
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	5 cut(s)	319, 334, 509, 572, 803
MspR9I	CCNGG	4 cut(s)	320, 335, 527, 572
Mva1269I	GAATGC	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	363, 370
NciI	CCSGG	3 cut(s)	320, 335, 572
NcoI	CCATGG	1 cut(s)	282
NlaIII	CATG	3 cut(s)	286, 520, 742
NlaIV	GGNNCC	2 cut(s)	317, 595
NmeAIII	GCCGAG	1 cut(s)	792
OliI	CACNNNNGTG	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	289
PciSI	GCTCTTC	2 cut(s)	156, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PctI	GAATGC	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	324
PleI	GAGTC	3 cut(s)	271, 791, 834
PpsI	GAGTC	3 cut(s)	271, 791, 834
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	317, 595
PspPI	GGNCC	1 cut(s)	569
PspXI	VCTCGAGB	1 cut(s)	289
PstI	CTGCAG	3 cut(s)	424, 553, 565
RsaI	GTAC	3 cut(s)	225, 317, 507
RsaNI	GTAC	3 cut(s)	224, 316, 506
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	2 cut(s)	156, 301
SaqAI	TTAA	1 cut(s)	654
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	3 cut(s)	271, 791, 835
ScrFI	CCNGG	4 cut(s)	320, 335, 527, 572
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	8 cut(s)	77, 133, 234, 240, 296, 317, 438, 460
SfaNI	GCATC	3 cut(s)	454, 521, 708
SfcI	CTRYAG	4 cut(s)	233, 420, 549, 561
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	724, 808
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	318, 333, 525, 570
StyI	CCWWGG	2 cut(s)	249, 282
TaiI	ACGT	2 cut(s)	438, 460
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	724, 808
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	7 cut(s)	370, 428, 443, 545, 548, 557, 784
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	6 cut(s)	229, 419, 422, 539, 548, 551
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	2 cut(s)	724, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.