Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

34417213 .. 34420808

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGCTCTTGCGCTTACCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTTTAGTCCTGAGTTTAGAAAGGTGAATCCTATCTGCTGTGTGCCGGTACTTGTGAATGGGGACATAGCTGTTTCCGATTCATTTGCCATATTATTGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCTGAATCTGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCAAAAATTGAATGGGCTAAAGTTCATATTGGGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCAGGAAGATATGCAATTGGAGATGAAGTTTCTTTTGCAGATTTGTTCCTGGCGCCCCAGATTGATGCATCTTTTTCAAGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACAATGAGATACCAGCATTCATAGATGCTAGGCCGGATAAGCAGCCGGATGCTACTTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

5.26

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_2	PF13409	2 - 63	1.4e-12	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	3 - 62	4.4e-10	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 62	3.5e-08	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	93 - 164	1.6e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	3 cut(s)	62, 141, 240
AgsI	TTSAA	5 cut(s)	82, 284, 326, 423, 430
AjnI	CCWGG	2 cut(s)	393, 461
AluBI	AGCT	3 cut(s)	6, 68, 161
AluI	AGCT	3 cut(s)	6, 68, 161
Alw21I	GWGCWC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	191, 317, 520
AspLEI	GCGC	2 cut(s)	14, 400
AsuHPI	GGTGA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	2 cut(s)	8, 51
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	178, 329, 532
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	395, 463
BfaI	CTAG	2 cut(s)	434, 507
BfoI	RGCGCY	1 cut(s)	401
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	192, 318, 521
BlsI	GCNGC	3 cut(s)	193, 319, 522
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	395, 463
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	395, 463
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	262, 400, 422, 493, 517
BmuI	ACTGGG	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	395, 463
BseGI	GGATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	178, 329, 532
BshFI	GGCC	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	137, 512, 524
BslFI	GGGAC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	8, 51
Bsp143I	GATC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	395, 463
Bst4CI	ACNGT	2 cut(s)	20, 93
BstACI	GRCGYC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	532
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	2 cut(s)	14, 400
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	2 cut(s)	395, 463
BstSCI	CCNGG	2 cut(s)	393, 461
BstV1I	GCAGC	3 cut(s)	178, 329, 532
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	532
CfoI	GCGC	2 cut(s)	14, 400
Cfr10I	RCCGGY	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	61, 140, 239
CviAII	CATG	2 cut(s)	439, 470
CviJI	RGCY	9 cut(s)	6, 49, 68, 161, 191, 220, 290, 511, 523
CviKI_1	RGCY	9 cut(s)	6, 49, 68, 161, 191, 220, 290, 511, 523
CviQI	GTAC	3 cut(s)	61, 140, 239
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	8, 51
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	393, 461
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	8, 51
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
FaeI	CATG	2 cut(s)	442, 473
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	438, 469
Fnu4HI	GCNGC	3 cut(s)	192, 318, 521
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	2 cut(s)	8, 51
Fsp4HI	GCNGC	3 cut(s)	192, 318, 521
FspBI	CTAG	2 cut(s)	434, 507
GlaI	GCGC	2 cut(s)	13, 399
GluI	GCNGC	3 cut(s)	192, 318, 521
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	3 cut(s)	137, 512, 524
HhaI	GCGC	2 cut(s)	14, 400
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	442, 473
Hin6I	GCGC	2 cut(s)	12, 398
HinP1I	GCGC	2 cut(s)	12, 398
HinfI	GANTC	3 cut(s)	118, 170, 229
HpaII	CCGG	3 cut(s)	137, 512, 524
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	26, 169, 228, 538
Hpy188III	TCNNGA	3 cut(s)	101, 269, 434
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	76, 233
HpyCH4III	ACNGT	2 cut(s)	20, 93
HpyCH4V	TGCA	8 cut(s)	194, 275, 317, 347, 359, 383, 413, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	442, 473
HspAI	GCGC	2 cut(s)	12, 398
KasI	GGCGCC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	178, 329, 532
LweI	GCATC	5 cut(s)	262, 400, 422, 493, 517
MaeI	CTAG	2 cut(s)	434, 507
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	266, 338, 363
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	8, 51
MluCI	AATT	4 cut(s)	27, 244, 279, 360
Mly113I	GGCGCC	1 cut(s)	398
MnlI	CCTC	3 cut(s)	44, 50, 466
Mph1103I	ATGCAT	1 cut(s)	415
MspI	CCGG	3 cut(s)	137, 512, 524
MspR9I	CCNGG	2 cut(s)	395, 463
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	2 cut(s)	395, 463
MwoI	GCNNNNNNNGC	1 cut(s)	517
NarI	GGCGCC	1 cut(s)	398
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	442, 473
NlaIV	GGNNCC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	118, 170, 229
PkrI	GCNGC	3 cut(s)	193, 319, 522
PluTI	GGCGCC	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	393, 461
PspGI	CCWGG	2 cut(s)	393, 461
PspN4I	GGNNCC	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	3 cut(s)	62, 141, 240
RsaNI	GTAC	3 cut(s)	61, 140, 239
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	192, 318, 521
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	395, 463
SduI	GDGCHC	2 cut(s)	8, 51
SetI	ASST	8 cut(s)	8, 42, 70, 117, 163, 313, 428, 467
SfaNI	GCATC	5 cut(s)	262, 400, 422, 493, 517
SfoI	GGCGCC	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	4 cut(s)	27, 244, 279, 360
SspDI	GGCGCC	1 cut(s)	397
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	434, 507
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	393, 461
TaaI	ACNGT	2 cut(s)	20, 93
TasI	AATT	4 cut(s)	27, 244, 279, 360
TatI	WGTACW	2 cut(s)	60, 238
TfiI	GAWTC	3 cut(s)	118, 170, 229
TseI	GCWGC	3 cut(s)	191, 317, 520
TspDTI	ATGAA	4 cut(s)	162, 287, 384, 487
XbaI	TCTAGA	1 cut(s)	433
XspI	CTAG	2 cut(s)	434, 507
ZrmI	AGTACT	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.