Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

33331394 .. 33335689

Gene Structure 4296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGAGTGCTAGTGACATCAATGGCGATCAACAACTGAAATTGTATTCCTACTACAGGAGCTCTTGCTCTTTCCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAGGCTGTAAACTTGTTGAAGGGAGAACAGTATAGTCCTGAGTTTAGAAAGCTCAATCCGATCGGCTATGTGCCGGTGCTTGTGGATGGGGACTTAACTGTTTCCGATTCATTTGCCATTTTATTGTATTTGGAAGAAAAGTACCCACAACATCCGCTGTTGCCTAAAGACCTTCAGCGAAAGGCCATTAACTTCCAGGCTGCAAATGTTGTTTGCTCAAGCATACAGCCCCTTCAGAATCTGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCTAAAATTGAATGGGCTAAAGTTCATATTGAGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCTGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGCAGATTTGTTTTTGGCGCCCCAGATTCATGCAGCTTTTACAAGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGTTACCGACAAGTTCAAGAGAAAAATTTCCACCAACTAAGGTTTTCGTTGAAGCATTCGGAACGTTGCAACATAGTAACACTAAGATGTATAAATAAGGGTTGTCCGATAATGGAACAGGTTGAAACTGCAGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

244

Amino Acids

27.75

Weight (kDa)

8.18

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	12 - 85	5.3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	15 - 91	2.4e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	21 - 86	4.7e-16	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	141 - 199	2.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	526
AciI	CCGC	1 cut(s)	275
AclI	AACGTT	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	2 cut(s)	278, 338
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	3 cut(s)	119, 263, 369
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	7 cut(s)	139, 413, 455, 559, 608, 643, 716
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	63, 172, 545
AluI	AGCT	3 cut(s)	63, 172, 545
Alw21I	GWGCWC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	320, 446, 542
ApoI	RAATTY	1 cut(s)	616
Asp700I	GAANNNNTTC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	65, 108
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	307, 458, 554
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	2 cut(s)	12, 563
BfmI	CTRYAG	2 cut(s)	55, 720
BfoI	RGCGCY	1 cut(s)	530
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	3 cut(s)	321, 447, 543
BlsI	GCNGC	3 cut(s)	322, 448, 544
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	496, 574, 591
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	211, 271
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	496, 574, 591
BseXI	GCAGC	3 cut(s)	307, 458, 554
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	526
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	65, 108
Bsp143I	GATC	3 cut(s)	28, 180, 457
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	496, 574, 591
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	3 cut(s)	28, 180, 457
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	150, 220
BstACI	GRCGYC	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	159, 629, 674
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	211, 271
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	3 cut(s)	31, 183, 460
BstMBI	GATC	3 cut(s)	28, 180, 457
BstMCI	CGRYCG	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	2 cut(s)	55, 720
BstV1I	GCAGC	3 cut(s)	307, 458, 554
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	211, 271
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	118, 262, 368
CviAII	CATG	2 cut(s)	539, 568
CviQI	GTAC	3 cut(s)	118, 262, 368
DdeI	CTNAG	3 cut(s)	159, 629, 674
DinI	GGCGCC	1 cut(s)	528
DpnI	GATC	3 cut(s)	30, 182, 459
DpnII	GATC	3 cut(s)	28, 180, 457
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 108
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	278, 338
EcoICRI	GAGCTC	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	315
EcoT38I	GRGCYC	2 cut(s)	65, 108
EgeI	GGCGCC	1 cut(s)	528
EheI	GGCGCC	1 cut(s)	528
FaeI	CATG	2 cut(s)	542, 571
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	538, 567
Fnu4HI	GCNGC	3 cut(s)	321, 447, 543
FokI	GGATG	2 cut(s)	218, 258
FriOI	GRGCYC	2 cut(s)	65, 108
Fsp4HI	GCNGC	3 cut(s)	321, 447, 543
FspBI	CTAG	2 cut(s)	12, 563
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	3 cut(s)	321, 447, 543
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	542, 571
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	3 cut(s)	227, 358, 535
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	6 cut(s)	83, 180, 226, 357, 652, 699
Hpy188III	TCNNGA	4 cut(s)	158, 398, 563, 608
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	133, 302, 362
HpyCH4III	ACNGT	2 cut(s)	150, 220
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	7 cut(s)	323, 446, 488, 512, 542, 660, 722
HpyF3I	CTNAG	3 cut(s)	159, 629, 674
HpySE526I	ACGT	1 cut(s)	655
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	542, 571
HspAI	GCGC	1 cut(s)	527
KasI	GGCGCC	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	28, 180, 457
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	3 cut(s)	307, 458, 554
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	12, 563
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	3 cut(s)	14, 593, 667
MalI	GATC	3 cut(s)	30, 182, 459
MboI	GATC	3 cut(s)	28, 180, 457
MboII	GAAGA	4 cut(s)	266, 395, 467, 492
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	65, 108
MluCI	AATT	5 cut(s)	41, 84, 373, 408, 616
Mly113I	GGCGCC	1 cut(s)	527
MnlI	CCTC	2 cut(s)	101, 107
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	2 cut(s)	215, 309
MslI	CAYNNNNRTG	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	317
NarI	GGCGCC	1 cut(s)	527
NdeII	GATC	3 cut(s)	28, 180, 457
NlaIII	CATG	2 cut(s)	542, 571
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	227, 358, 535
PkrI	GCNGC	3 cut(s)	322, 448, 544
Ple19I	CGATCG	1 cut(s)	183
PluTI	GGCGCC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	655
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	528
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	457
PvuI	CGATCG	1 cut(s)	183
RsaI	GTAC	3 cut(s)	119, 263, 369
RsaNI	GTAC	3 cut(s)	118, 262, 368
RseI	CAYNNNNRTG	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	215, 309
SatI	GCNGC	3 cut(s)	321, 447, 543
Sau3AI	GATC	3 cut(s)	28, 180, 457
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	65, 108
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	2 cut(s)	55, 720
SfoI	GGCGCC	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	5 cut(s)	41, 84, 373, 408, 616
SsiI	CCGC	1 cut(s)	275
SspDI	GGCGCC	1 cut(s)	526
SspMI	CTAG	2 cut(s)	12, 563
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	150, 220
TaiI	ACGT	1 cut(s)	658
TasI	AATT	5 cut(s)	41, 84, 373, 408, 616
TatI	WGTACW	2 cut(s)	117, 367
TfiI	GAWTC	3 cut(s)	227, 358, 535
Tru1I	TTAA	2 cut(s)	215, 309
Tru9I	TTAA	2 cut(s)	215, 309
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	320, 446, 542
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	219, 416, 513, 527
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	729
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	616
XbaI	TCTAGA	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	2 cut(s)	12, 563
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.