Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

37090688 .. 37096801

Gene Structure 6114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG334300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGACTGCTAGTGATCAACAACTGAAATTGTATTCCTACTACAGGAGCTCTTGCTCTTTCCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGAAAGAACAGTATAGTCCTGAGTTTAGAAAGCTCAATCCAATCGGCTATGTGCCGGTGCTAGTGGATGGGGAAATGGCTGTTTCCGATTCATTTGCCATTTTATTGTATTTGGAAGAAAAGTATCCACAACATCCGTTGTTGCCTAAAGACCTTCAGCGAAAGGCCATTAACCTCCAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCAGAATCTGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCGAAAATTGAATGGGCTAAAGTTCATATTGAGAAAGGTTTTGCAGCACTTGAAGATCTACTGAGAAACTATGCAGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGTATGTTTGATCAATTTTGTCTTCTTTTTTCTTCTTCTCCTTCTTATGAAAAAAAGAGTGATCAACTTTGTCAGTGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

193

Amino Acids

22.15

Weight (kDa)

9.12

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 81	6.1e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	11 - 87	1.3e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	17 - 82	2e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	266, 326
AfaI	GTAC	2 cut(s)	107, 357
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	127, 401, 443
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	51, 113, 160
AluI	AGCT	3 cut(s)	51, 113, 160
Alw21I	GWGCWC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	308, 434
BanII	GRGCYC	2 cut(s)	53, 96
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	295, 446
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	261
BclI	TGATCA	3 cut(s)	16, 507, 558
BfaI	CTAG	2 cut(s)	12, 188
BfmI	CTRYAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	2 cut(s)	309, 435
BlsI	GCNGC	2 cut(s)	310, 436
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	2 cut(s)	287, 501
BpuEI	CTTGAG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	199, 259
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	138, 443
BseNI	ACTGG	1 cut(s)	484
BseXI	GCAGC	2 cut(s)	295, 446
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	53, 96
Bsp143I	GATC	4 cut(s)	16, 445, 507, 558
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	139, 444
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	4 cut(s)	16, 445, 507, 558
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	147, 452
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	199, 259
BstKTI	GATC	4 cut(s)	19, 448, 510, 561
BstMBI	GATC	4 cut(s)	16, 445, 507, 558
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	295, 446
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	199, 259
BtsIMutI	CAGTG	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	106, 356
CviQI	GTAC	2 cut(s)	106, 356
DdeI	CTNAG	2 cut(s)	147, 452
DpnI	GATC	4 cut(s)	18, 447, 509, 560
DpnII	GATC	4 cut(s)	16, 445, 507, 558
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 96
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	266, 326
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	53, 96
FbaI	TGATCA	3 cut(s)	16, 507, 558
Fnu4HI	GCNGC	2 cut(s)	309, 435
FokI	GGATG	2 cut(s)	206, 246
FriOI	GRGCYC	2 cut(s)	53, 96
Fsp4HI	GCNGC	2 cut(s)	309, 435
FspBI	CTAG	2 cut(s)	12, 188
GluI	GCNGC	2 cut(s)	309, 435
GsuI	CTGGAG	2 cut(s)	287, 501
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	182
HinfI	GANTC	2 cut(s)	215, 346
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	71, 214, 345
Hpy188III	TCNNGA	2 cut(s)	146, 386
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	290, 350, 548
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	311, 434, 464, 476, 575
HpyF3I	CTNAG	2 cut(s)	147, 452
Ksp22I	TGATCA	3 cut(s)	16, 507, 558
Kzo9I	GATC	4 cut(s)	16, 445, 507, 558
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	9 cut(s)	31, 159, 195, 290, 317, 335, 399, 450, 465
Lsp1109I	GCAGC	2 cut(s)	295, 446
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	12, 188
MalI	GATC	4 cut(s)	18, 447, 509, 560
MboI	GATC	4 cut(s)	16, 445, 507, 558
MboII	GAAGA	8 cut(s)	139, 254, 383, 455, 480, 511, 521, 524
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	53, 96
MluCI	AATT	5 cut(s)	29, 72, 361, 396, 511
MnlI	CCTC	3 cut(s)	89, 95, 311
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
NdeII	GATC	4 cut(s)	16, 445, 507, 558
PfeI	GAWTC	2 cut(s)	215, 346
PkrI	GCNGC	2 cut(s)	310, 436
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	107, 357
RsaNI	GTAC	2 cut(s)	106, 356
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	309, 435
Sau3AI	GATC	4 cut(s)	16, 445, 507, 558
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	53, 96
SetI	ASST	7 cut(s)	53, 87, 115, 162, 282, 303, 430
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	5 cut(s)	29, 72, 361, 396, 511
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	12, 188
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	138
TasI	AATT	5 cut(s)	29, 72, 361, 396, 511
TatI	WGTACW	2 cut(s)	105, 355
TfiI	GAWTC	2 cut(s)	215, 346
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	2 cut(s)	308, 434
TspDTI	ATGAA	4 cut(s)	207, 404, 501, 560
TspGWI	ACGGA	2 cut(s)	53, 252
TspRI	CASTG	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	12, 188
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.