Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

14475264 .. 14477624

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGCCAATGAAGTCAAAGATCAACAAAATGTTTTCACCAGCAAGTAAAGGCTCTGCGGATGGCAGGGGAGTAACGGATTTGGCAGACTTGGAAATCAGGCCTTGTGGAATGTTGGTTCAAAAGCGCAATGGGGAGACGAATCCAACTTCTGTTTCGATTCCCATAATCAGAGTTAGAGTCAAGTATGGTTCTTCGTATCACGAAATTAGTATCAGCTCCCATGCTAGCTTTGGAGAGTTGAAGAAAATGTTGGCAGGACCAACTAAACTGCATCATGAAGATCAGAAGCTGATATACAAAAACAAAGAGAGAGATTCCAAAGAGTATCTTGATGTGGCAAGAGTTAAAAATGGATCCAAAATTGTGTTGGTGGAGGACATTGTGAGTAGAGAAAAAAGGTGCCTAGAGTTACTCAGAAATGCAAATTCTCAGAAGTCTTCGAAAGCCTTGGCTGAAATCAACTTGGAAGTTGACAAGCTTGCAGGCCAGGTCACAGCTTTGGAAGCAACAGCTTCAAATGGTGGGAAAGTAATGGAGAAAGATGTGGACAATTTGACGGAGCTCTTGATGGTGAGGTTGATTAAACTTGATGGAATTGTTGCAGATGGAGATTTGAAATTGCAGAGAAGAGTGCTGGTGAGAAGAGTTCAGAAGTACATTGAGATTCTTGATATGTTGAAGTACCAGAATTCCAAATCTAGCAGCAATGGGGCTAAAATCCAATTGCAGAAACAAGATAACCCAATTGGCCAAATTTCGAGAGACTTGAGGCCAATGCAGAAACAGCAACCGCCGACAAAAAAGGGAAATTCTGTAAGGACAATACCAAAGATGCAGCAACAACAGCAAAGGCATTCTGAGTCGGTAGTTGTTACAACTAAATGGGAAACTTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

300

Amino Acids

33.75

Weight (kDa)

9.71

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	152 - 226	4.6e-16	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	2 cut(s)	59, 794
AclWI	GGATC	2 cut(s)	351, 364
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	4 cut(s)	427, 691, 756, 811
AfaI	GTAC	2 cut(s)	659, 686
AgsI	TTSAA	5 cut(s)	122, 244, 519, 619, 682
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	4 cut(s)	139, 171, 236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	7 cut(s)	219, 231, 292, 481, 500, 515, 565
AluI	AGCT	7 cut(s)	219, 231, 292, 481, 500, 515, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	131, 759
AlwI	GGATC	2 cut(s)	351, 364
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	4 cut(s)	101, 487, 751, 773
ApeKI	GCWGC	2 cut(s)	705, 838
ApoI	RAATTY	4 cut(s)	427, 691, 756, 811
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	30, 586, 652
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	717, 850
BccI	CCATC	4 cut(s)	56, 565, 587, 602
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	131, 759
BfaI	CTAG	3 cut(s)	228, 407, 702
BisI	GCNGC	2 cut(s)	706, 839
BlsI	GCNGC	2 cut(s)	707, 840
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	6, 358, 404
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	283, 825
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	450
Bse3DI	GCAATG	2 cut(s)	136, 715
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	136, 715
BseMII	CTCAG	3 cut(s)	430, 446, 852
BseXI	GCAGC	2 cut(s)	717, 850
BshFI	GGCC	4 cut(s)	103, 489, 753, 775
BshNI	GGYRCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	131, 759
BsmBI	CGTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	4 cut(s)	103, 489, 753, 775
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	21, 283, 356
BspACI	CCGC	2 cut(s)	59, 794
BspANI	GGCC	4 cut(s)	103, 489, 753, 775
BspCNI	CTCAG	3 cut(s)	429, 445, 853
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	6, 358, 404
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	351, 364
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	136, 715
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	3 cut(s)	21, 283, 356
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	625, 640
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	229, 483, 487
BstDEI	CTNAG	3 cut(s)	416, 432, 861
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	24, 286, 359
BstMAI	GTCTC	2 cut(s)	131, 759
BstMBI	GATC	3 cut(s)	21, 283, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	717, 850
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	4 cut(s)	103, 489, 753, 775
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	229, 483, 487
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	658, 685
CviAII	CATG	2 cut(s)	224, 278
CviQI	GTAC	2 cut(s)	658, 685
DdeI	CTNAG	3 cut(s)	416, 432, 861
DpnI	GATC	3 cut(s)	23, 285, 358
DpnII	GATC	3 cut(s)	21, 283, 356
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	625, 640
EarI	CTCTTC	2 cut(s)	625, 640
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	227, 281
FaiI	YATR	6 cut(s)	167, 189, 225, 279, 298, 677
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	2 cut(s)	223, 277
Fnu4HI	GCNGC	2 cut(s)	706, 839
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	706, 839
FspBI	CTAG	3 cut(s)	228, 407, 702
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	706, 839
HaeIII	GGCC	4 cut(s)	103, 489, 753, 775
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	227, 281
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	6 cut(s)	142, 160, 180, 317, 667, 863
HphI	GGTGA	3 cut(s)	30, 586, 652
Hpy166II	GTNNAC	2 cut(s)	475, 550
Hpy188I	TCNGA	6 cut(s)	173, 288, 419, 435, 654, 862
Hpy188III	TCNNGA	6 cut(s)	203, 278, 332, 568, 671, 762
Hpy8I	GTNNAC	2 cut(s)	475, 550
HpyCH4V	TGCA	8 cut(s)	274, 425, 485, 605, 625, 730, 781, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
HpyF3I	CTNAG	3 cut(s)	416, 432, 861
Hsp92II	CATG	2 cut(s)	227, 281
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	21, 283, 356
LmnI	GCTCC	3 cut(s)	4, 224, 562
LpnPI	CCDG	9 cut(s)	52, 54, 85, 243, 471, 476, 503, 623, 701
Lsp1109I	GCAGC	2 cut(s)	717, 850
LweI	GCATC	2 cut(s)	283, 825
MaeI	CTAG	3 cut(s)	228, 407, 702
MaeIII	GTNAC	4 cut(s)	73, 411, 493, 874
MalI	GATC	3 cut(s)	23, 285, 358
MboI	GATC	3 cut(s)	21, 283, 356
MboII	GAAGA	6 cut(s)	186, 256, 293, 432, 642, 657
MfeI	CAATTG	2 cut(s)	725, 747
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	189, 872
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	370, 570, 765
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	2 cut(s)	348, 585
Msp20I	TGGCCA	1 cut(s)	753
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	2 cut(s)	725, 747
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
NdeII	GATC	3 cut(s)	21, 283, 356
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	227, 281
NlaIV	GGNNCC	3 cut(s)	6, 358, 404
NmuCI	GTSAC	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	4 cut(s)	142, 160, 317, 667
PkrI	GCNGC	2 cut(s)	707, 840
PleI	GAGTC	2 cut(s)	188, 871
PpsI	GAGTC	2 cut(s)	188, 871
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	6, 358, 404
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	659, 686
RsaNI	GTAC	2 cut(s)	658, 685
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	348, 585
SatI	GCNGC	2 cut(s)	706, 839
Sau3AI	GATC	3 cut(s)	21, 283, 356
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	189, 872
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	283, 825
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	59, 794
SspMI	CTAG	3 cut(s)	228, 407, 702
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	450
TaqI	TCGA	4 cut(s)	158, 443, 761, 897
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	4 cut(s)	142, 160, 317, 667
Tru1I	TTAA	2 cut(s)	348, 585
Tru9I	TTAA	2 cut(s)	348, 585
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	705, 838
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	26, 294
TspGWI	ACGGA	2 cut(s)	92, 575
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	4 cut(s)	427, 691, 756, 811
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 367
XspI	CTAG	3 cut(s)	228, 407, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.