Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

33320091 .. 33324616

Gene Structure 4526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTGGTAGTGACAAAAATGGTGATCAACAACTGAAATTGTATTCCTGCTACATGAGCTCTTGCGCTTACCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTGGAAGGGAGAACAGTTTAGTCCTGAGTTTAGAAAGCTCAATCCGATCGGCCATGTGCCGGTGCTTGTGGATGGGGACTTAGCTGTTTCCGATTCATTTGCCATTTTATTGTATTTGGAAGAAAAGTACCCACAACATCCGTTGTTGCCTAAAGACCTTCAGCGAAAGGCCATTAACTTCCAGGCTGCCAATATTGTTTGCTCAAGCATACAGCCCCTTCAGAATCAGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGAAGCGAAAATTGAATTGGCTAAAGTTCATATTGAGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCAGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGCAGATTTGTTTTTGGCACCCCAGATTGATGCAGCTTTTACATGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACAATGAGATACCTGCATTCATAGATGCTAGGCCAGATAAGCAGCCGGATGCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

222

Amino Acids

25.04

Weight (kDa)

5.43

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	12 - 85	8.3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	15 - 91	9.6e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	21 - 86	1.1e-16	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	132 - 207	3.3e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	137 - 186	4.3e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	2 cut(s)	278, 338
AfaI	GTAC	3 cut(s)	119, 263, 369
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	413, 455, 559
AjnI	CCWGG	2 cut(s)	315, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	63, 125, 172, 218, 545
AluI	AGCT	5 cut(s)	63, 125, 172, 218, 545
Alw21I	GWGCWC	1 cut(s)	65
AoxI	GGCC	3 cut(s)	184, 303, 638
ApeKI	GCWGC	4 cut(s)	320, 446, 542, 649
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	65, 108
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	307, 458, 554, 661
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	317, 592
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	2 cut(s)	563, 636
BfuAI	ACCTGC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	4 cut(s)	321, 447, 543, 650
BlsI	GCNGC	4 cut(s)	322, 448, 544, 651
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	317, 592
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	2 cut(s)	317, 592
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	3 cut(s)	529, 622, 646
BmuI	ACTGGG	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	496, 574
BseBI	CCWGG	2 cut(s)	317, 592
BseGI	GGATG	3 cut(s)	211, 271, 661
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	496, 574
BseXI	GCAGC	4 cut(s)	307, 458, 554, 661
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	186, 305, 640
BshNI	GGYRCC	1 cut(s)	526
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	194, 653
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	186, 305, 640
Bsp1286I	GDGCHC	2 cut(s)	65, 108
Bsp143I	GATC	3 cut(s)	28, 180, 457
BspANI	GGCC	3 cut(s)	186, 305, 640
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	496, 574
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	3 cut(s)	28, 180, 457
Bst2UI	CCWGG	2 cut(s)	317, 592
Bst4CI	ACNGT	2 cut(s)	77, 150
BstDEI	CTNAG	2 cut(s)	159, 214
BstF5I	GGATG	3 cut(s)	211, 271, 661
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	31, 183, 460
BstMBI	GATC	3 cut(s)	28, 180, 457
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 646
BstNI	CCWGG	2 cut(s)	317, 592
BstSCI	CCNGG	2 cut(s)	315, 590
BstV1I	GCAGC	4 cut(s)	307, 458, 554, 661
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	186, 305, 640
BtsCI	GGATG	3 cut(s)	211, 271, 661
BveI	ACCTGC	1 cut(s)	628
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	118, 262, 368
CviAII	CATG	5 cut(s)	58, 188, 552, 568, 599
CviQI	GTAC	3 cut(s)	118, 262, 368
DdeI	CTNAG	2 cut(s)	159, 214
DpnI	GATC	3 cut(s)	30, 182, 459
DpnII	GATC	3 cut(s)	28, 180, 457
EaeI	YGGCCR	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 108
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	278, 338
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	315, 590
EcoT38I	GRGCYC	2 cut(s)	65, 108
FaeI	CATG	5 cut(s)	61, 191, 555, 571, 602
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	57, 187, 551, 567, 598
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	321, 447, 543, 650
FokI	GGATG	2 cut(s)	218, 258
FriOI	GRGCYC	2 cut(s)	65, 108
Fsp4HI	GCNGC	4 cut(s)	321, 447, 543, 650
FspBI	CTAG	2 cut(s)	563, 636
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	321, 447, 543, 650
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	186, 305, 640
HapII	CCGG	2 cut(s)	194, 653
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	61, 191, 555, 571, 602
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	227, 358
HpaII	CCGG	2 cut(s)	194, 653
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	83, 180, 226, 357
Hpy188III	TCNNGA	3 cut(s)	158, 398, 563
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	133, 302, 362
HpyCH4III	ACNGT	2 cut(s)	77, 150
HpyCH4V	TGCA	7 cut(s)	446, 476, 488, 512, 542, 598, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 646
HpyF3I	CTNAG	2 cut(s)	159, 214
Hsp92II	CATG	5 cut(s)	61, 191, 555, 571, 602
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 180, 457
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	4 cut(s)	307, 458, 554, 661
LweI	GCATC	3 cut(s)	529, 622, 646
MaeI	CTAG	2 cut(s)	563, 636
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	30, 182, 459
MboI	GATC	3 cut(s)	28, 180, 457
MboII	GAAGA	4 cut(s)	266, 395, 467, 492
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	65, 108
MluCI	AATT	5 cut(s)	41, 84, 373, 408, 413
MnlI	CCTC	3 cut(s)	101, 107, 595
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	194, 653
MspR9I	CCNGG	2 cut(s)	317, 592
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	317, 592
MwoI	GCNNNNNNNGC	2 cut(s)	60, 646
NdeII	GATC	3 cut(s)	28, 180, 457
NlaIII	CATG	5 cut(s)	61, 191, 555, 571, 602
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	227, 358
PkrI	GCNGC	4 cut(s)	322, 448, 544, 651
Ple19I	CGATCG	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	315, 590
PspGI	CCWGG	2 cut(s)	315, 590
PspN4I	GGNNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	457
PvuI	CGATCG	1 cut(s)	183
RsaI	GTAC	3 cut(s)	119, 263, 369
RsaNI	GTAC	3 cut(s)	118, 262, 368
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	321, 447, 543, 650
Sau3AI	GATC	3 cut(s)	28, 180, 457
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	317, 592
SduI	GDGCHC	2 cut(s)	65, 108
SfaNI	GCATC	3 cut(s)	529, 622, 646
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	5 cut(s)	41, 84, 373, 408, 413
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	563, 636
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	315, 590
TaaI	ACNGT	2 cut(s)	77, 150
TasI	AATT	5 cut(s)	41, 84, 373, 408, 413
TatI	WGTACW	2 cut(s)	117, 367
TfiI	GAWTC	2 cut(s)	227, 358
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	320, 446, 542, 649
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	219, 416, 513, 616, 654
TspGWI	ACGGA	1 cut(s)	264
XbaI	TCTAGA	1 cut(s)	562
XspI	CTAG	2 cut(s)	563, 636
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.