Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

33325560 .. 33330047

Gene Structure 4488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGAGTGGTAGTGATCAGCAACTGAAATTGTATTCCTATTACAGGAGCTCTTGCTCTTACCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTATAGTCCTGAGTTTAGAAAGCTGAATCCTATCGGCTATGTGCCGGTGCTTGTGGATGGGGACATAGCTGTTTCCGATTCATTTGCCATTTTATTGTATTTGGAAGAAAAGTACCCACAACATCCGTTGTTGCCTAAAGACCTTCAGCGAAAGGCCATTAACTTCCAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCAGAATCTGGCAGTACTGAAGTATATAGAAGAAAGGGTTAGTCCAGATGCGAAAATTGAATGGGCTAAAGTTCACATTGAGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCAGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGCAGATTTGTTTTTGGCGCCCCAGATTCATGCAGCTTTTACAAGGTTCAATCTAGACATGACCCAGTTCCCCATTTTGTCCAGGTTGCATGAGGCATACAATGAGATACCAGCATTCATAGATGCTAGGCCAGATAAGCAGCTGGATGCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

218

Amino Acids

24.77

Weight (kDa)

6.43

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 81	4.7e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	11 - 87	1.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	17 - 82	1.1e-15	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	131 - 203	1.4e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	137 - 194	2.1e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AcuI	CTGAAG	3 cut(s)	266, 326, 380
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	3 cut(s)	107, 251, 357
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	127, 401, 443, 547
AjnI	CCWGG	2 cut(s)	303, 578
AluBI	AGCT	6 cut(s)	51, 113, 160, 206, 533, 640
AluI	AGCT	6 cut(s)	51, 113, 160, 206, 533, 640
Alw21I	GWGCWC	1 cut(s)	53
AlwNI	CAGNNNCTG	2 cut(s)	25, 349
AoxI	GGCC	2 cut(s)	291, 626
ApeKI	GCWGC	4 cut(s)	308, 434, 530, 637
AspLEI	GCGC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	514
BanII	GRGCYC	2 cut(s)	53, 96
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	295, 446, 542, 649
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	305, 580
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	2 cut(s)	551, 624
BfoI	RGCGCY	1 cut(s)	518
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	4 cut(s)	309, 435, 531, 638
BlsI	GCNGC	4 cut(s)	310, 436, 532, 639
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	305, 580
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	305, 580
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	3 cut(s)	379, 610, 634
BmuI	ACTGGG	1 cut(s)	556
BpmI	CTGGAG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	484, 562
BseBI	CCWGG	2 cut(s)	305, 580
BseGI	GGATG	3 cut(s)	199, 259, 649
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	484, 562
BseXI	GCAGC	4 cut(s)	295, 446, 542, 649
BshFI	GGCC	2 cut(s)	293, 628
BshNI	GGYRCC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	293, 628
Bsp1286I	GDGCHC	2 cut(s)	53, 96
Bsp143I	GATC	2 cut(s)	16, 445
BspANI	GGCC	2 cut(s)	293, 628
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	484, 562
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	2 cut(s)	16, 445
BssNI	GRCGYC	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	305, 580
Bst4CI	ACNGT	2 cut(s)	65, 138
BstACI	GRCGYC	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	199, 259, 649
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	2 cut(s)	19, 448
BstMBI	GATC	2 cut(s)	16, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstNI	CCWGG	2 cut(s)	305, 580
BstSCI	CCNGG	2 cut(s)	303, 578
BstV1I	GCAGC	4 cut(s)	295, 446, 542, 649
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	293, 628
BtsCI	GGATG	3 cut(s)	199, 259, 649
CaiI	CAGNNNCTG	2 cut(s)	25, 349
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	106, 250, 356
CviAII	CATG	3 cut(s)	527, 556, 587
CviQI	GTAC	3 cut(s)	106, 250, 356
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	2 cut(s)	18, 447
DpnII	GATC	2 cut(s)	16, 445
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 96
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	3 cut(s)	266, 326, 380
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	303, 578
EcoT38I	GRGCYC	2 cut(s)	53, 96
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
FaeI	CATG	3 cut(s)	530, 559, 590
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	526, 555, 586
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	4 cut(s)	309, 435, 531, 638
FokI	GGATG	2 cut(s)	206, 246
FriOI	GRGCYC	2 cut(s)	53, 96
Fsp4HI	GCNGC	4 cut(s)	309, 435, 531, 638
FspBI	CTAG	2 cut(s)	551, 624
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	4 cut(s)	309, 435, 531, 638
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	293, 628
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	3 cut(s)	530, 559, 590
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	4 cut(s)	163, 215, 346, 523
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	118, 415
Hpy188I	TCNGA	3 cut(s)	71, 214, 345
Hpy188III	TCNNGA	3 cut(s)	146, 386, 551
Hpy8I	GTNNAC	2 cut(s)	118, 415
HpyAV	CCTTC	3 cut(s)	121, 290, 350
HpyCH4III	ACNGT	2 cut(s)	65, 138
HpyCH4V	TGCA	7 cut(s)	311, 434, 464, 476, 500, 530, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	3 cut(s)	530, 559, 590
HspAI	GCGC	1 cut(s)	515
KasI	GGCGCC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 445
LmnI	GCTCC	2 cut(s)	48, 652
Lsp1109I	GCAGC	4 cut(s)	295, 446, 542, 649
LweI	GCATC	3 cut(s)	379, 610, 634
MaeI	CTAG	2 cut(s)	551, 624
MalI	GATC	2 cut(s)	18, 447
MboI	GATC	2 cut(s)	16, 445
MboII	GAAGA	4 cut(s)	254, 383, 455, 480
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	53, 96
MluCI	AATT	3 cut(s)	29, 72, 396
Mly113I	GGCGCC	1 cut(s)	515
MnlI	CCTC	3 cut(s)	89, 95, 583
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	305, 580
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	2 cut(s)	305, 580
MwoI	GCNNNNNNNGC	1 cut(s)	634
NarI	GGCGCC	1 cut(s)	515
NdeII	GATC	2 cut(s)	16, 445
NlaIII	CATG	3 cut(s)	530, 559, 590
NlaIV	GGNNCC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	163, 215, 346, 523
PkrI	GCNGC	4 cut(s)	310, 436, 532, 639
PluTI	GGCGCC	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	303, 578
PspGI	CCWGG	2 cut(s)	303, 578
PspN4I	GGNNCC	1 cut(s)	516
PstNI	CAGNNNCTG	2 cut(s)	25, 349
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	3 cut(s)	107, 251, 357
RsaNI	GTAC	3 cut(s)	106, 250, 356
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	309, 435, 531, 638
Sau3AI	GATC	2 cut(s)	16, 445
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	305, 580
SduI	GDGCHC	2 cut(s)	53, 96
SfaNI	GCATC	3 cut(s)	379, 610, 634
SfoI	GGCGCC	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	3 cut(s)	29, 72, 396
SspDI	GGCGCC	1 cut(s)	514
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	551, 624
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	303, 578
TaaI	ACNGT	2 cut(s)	65, 138
TasI	AATT	3 cut(s)	29, 72, 396
TatI	WGTACW	2 cut(s)	105, 355
TfiI	GAWTC	4 cut(s)	163, 215, 346, 523
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	4 cut(s)	308, 434, 530, 637
TspDTI	ATGAA	5 cut(s)	207, 501, 515, 604, 642
TspGWI	ACGGA	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	550
XspI	CTAG	2 cut(s)	551, 624
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.