Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

7975022 .. 7976698

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGGTTCGACAGCCAAAGATGGTCTCTAAAGGGTATGACTGCCCTTGTTACCGGAGGAACTAAAGGCATCGGATATGCCATTGTGGAAGAGCTAGCTGGTCTTGGGGCTACTGTGCATACCTGTGCTCGCAACCAAGAACAGATCGACGAGAGGGTTCAAGAATGGAAGAGCAAGGGATTTAAAGTGAGTGGCTCAGTTTGTGACCTGACGTCCAAATCTCAAAGGGAGGAGCTCATCAAAACTGTCTCGTCTGTCTTTGATGGCAAGCTTAACATCCTTGTAAATAATGCTGCTTCAGTTACCCTGAGAAGAACAGAGGACTATACTTTGGAAGATTTATCGAGTATGATGGGTAGCAATGTTGAATCTTCTTACCATCTGTGTCAACTTTCATACCCTCTCTTGAAGGCCTCAGAAAATGCCAGTATTGTATTTATCGCCTCCATAGCTGGTGCCATTGCTCTACCTAGACTATCTGCTTATGCAGCAACAAAGAGTGCTGTTATCCAGATTTCAAAGAACTTGGCGTGTGAGTGGGCAAGAGACAAAATTCGAACAAACACTGTAGCGCCATGGGCTGTCAACACCGGTGTTAAAGTTGGAAATGATGATCATTCTGAGGATTTCAGAAGATTAATAGGTCGAACTCCAATTCGCCGTGTTGCTGAGCCTAATGAAATTTCATCCTTGGTCTCATTCCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTGTCAATGTTGATGGAGGATTTACAGTGAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

28.07

Weight (kDa)

7.62

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 201	6.5e-46	short chain dehydrogenase
KR	PF08659	15 - 169	4.8e-15	KR domain
adh_short_C2	PF13561	23 - 200	2.1e-36	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	774
AciI	CCGC	1 cut(s)	774
AcsI	RAATTY	2 cut(s)	555, 684
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	164, 371, 412, 522
AhdI	GACNNNNNGTC	2 cut(s)	214, 743
AluBI	AGCT	5 cut(s)	97, 101, 238, 274, 455
AluI	AGCT	5 cut(s)	97, 101, 238, 274, 455
Alw21I	GWGCWC	2 cut(s)	133, 240
Alw26I	GTCTC	4 cut(s)	33, 256, 543, 703
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	2 cut(s)	555, 684
AseI	ATTAAT	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	133, 240
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	5 cut(s)	18, 260, 349, 390, 749
BceAI	ACGGC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	33, 256, 543, 703
BfaI	CTAG	3 cut(s)	98, 474, 781
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	3 cut(s)	297, 492, 720
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmeRI	GACNNNNNGTC	2 cut(s)	214, 743
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	1 cut(s)	81
BmtI	GCTAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	33, 703
BsaJI	CCNNGG	2 cut(s)	578, 693
BsaWI	WCCGGW	2 cut(s)	56, 593
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	370, 462
BseDI	CCNNGG	2 cut(s)	578, 693
BseGI	GGATG	2 cut(s)	279, 689
BseMI	GCAATG	2 cut(s)	370, 462
BseMII	CTCAG	5 cut(s)	213, 302, 432, 615, 663
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	283, 503, 706
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	593
BsiHKAI	GWGCWC	2 cut(s)	133, 240
BsiSI	CCGG	2 cut(s)	57, 594
BsmAI	GTCTC	4 cut(s)	33, 256, 543, 703
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	2 cut(s)	33, 703
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	133, 240
Bsp143I	GATC	2 cut(s)	147, 616
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	5 cut(s)	212, 303, 431, 616, 664
BspLI	GGNNCC	1 cut(s)	460
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	2 cut(s)	87, 167
BspT104I	TTCGAA	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	2 cut(s)	33, 703
BsrBI	CCGCTC	1 cut(s)	774
BsrDI	GCAATG	2 cut(s)	370, 462
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	578, 693
BssMI	GATC	2 cut(s)	147, 616
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	578, 693
Bst4CI	ACNGT	4 cut(s)	118, 250, 571, 769
Bst6I	CTCTTC	2 cut(s)	87, 167
BstACI	GRCGYC	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	99, 133, 272
BstDEI	CTNAG	5 cut(s)	199, 311, 418, 624, 672
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	279, 689
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	150, 619
BstMAI	GTCTC	4 cut(s)	33, 256, 543, 703
BstMBI	GATC	2 cut(s)	147, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	283, 503, 706
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	279, 689
BtsIMutI	CAGTG	2 cut(s)	567, 774
Cac8I	GCNNGC	3 cut(s)	99, 133, 272
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	593
CspAI	ACCGGT	1 cut(s)	593
CviAII	CATG	1 cut(s)	579
DdeI	CTNAG	5 cut(s)	199, 311, 418, 624, 672
DpnI	GATC	2 cut(s)	149, 618
DpnII	GATC	2 cut(s)	147, 616
DraI	TTTAAA	1 cut(s)	187
DriI	GACNNNNNGTC	2 cut(s)	214, 743
Eam1104I	CTCTTC	2 cut(s)	87, 167
Eam1105I	GACNNNNNGTC	2 cut(s)	214, 743
EarI	CTCTTC	2 cut(s)	87, 167
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	578, 693
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	2 cut(s)	33, 703
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	578, 693
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	578, 693
FaeI	CATG	1 cut(s)	582
FaiI	YATR	9 cut(s)	41, 81, 123, 330, 353, 400, 452, 489, 580
FatI	CATG	1 cut(s)	578
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 676
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	3 cut(s)	98, 474, 781
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	57, 594
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	582
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	2 cut(s)	392, 589
HindII	GTYRAC	2 cut(s)	392, 589
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	57, 594
Hpy166II	GTNNAC	2 cut(s)	392, 589
Hpy188I	TCNGA	4 cut(s)	77, 421, 625, 635
Hpy188III	TCNNGA	3 cut(s)	164, 409, 514
Hpy8I	GTNNAC	2 cut(s)	392, 589
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	406, 722
HpyCH4III	ACNGT	4 cut(s)	118, 250, 571, 769
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	121, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
HpyF3I	CTNAG	5 cut(s)	199, 311, 418, 624, 672
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	582
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	147, 616
LguI	GCTCTTC	2 cut(s)	87, 167
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	3 cut(s)	98, 474, 781
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	52, 206, 304
MalI	GATC	2 cut(s)	149, 618
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	2 cut(s)	147, 616
MboII	GAAGA	6 cut(s)	104, 184, 327, 350, 366, 648
MhlI	GDGCHC	2 cut(s)	133, 240
MluCI	AATT	3 cut(s)	555, 657, 684
MmeI	TCCRAC	1 cut(s)	586
MseI	TTAA	4 cut(s)	186, 276, 600, 641
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	2 cut(s)	57, 594
MwoI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	147, 616
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	582
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	87, 167
PfeI	GAWTC	1 cut(s)	371
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	298, 493, 721
PshBI	ATTAAT	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	87, 167
SaqAI	TTAA	4 cut(s)	186, 276, 600, 641
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	2 cut(s)	147, 616
SduI	GDGCHC	2 cut(s)	133, 240
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	559
SgrAI	CRCCGGYG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	555, 657, 684
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	3 cut(s)	98, 474, 781
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	578, 693
TaaI	ACNGT	4 cut(s)	118, 250, 571, 769
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	5 cut(s)	12, 150, 347, 559, 649
TasI	AATT	3 cut(s)	555, 657, 684
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	186, 276, 600, 641
Tru9I	TTAA	4 cut(s)	186, 276, 600, 641
TscAI	CASTG	2 cut(s)	574, 774
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	387, 678, 696
TspRI	CASTG	2 cut(s)	574, 774
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	2 cut(s)	555, 684
XspI	CTAG	3 cut(s)	98, 474, 781
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.