Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

22851752 .. 22854075

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1148400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAAGTTTCGACAGCCAAAGGTGGTCTCTAAAAGGTAGAACAGCACTTGTTACAGGTGGAACCAAAGGCATTGGATTTGCCGTTGTAGAGGAGCTTGCAGGACTTGGGGCAACCGTACATATGTGCGCTCGAAACGGAGAACTGCTCCATGAGAGGATTCAAGAGTGGAAGAGTAAGGGGTTTGAAGTGAGTGGCTCAGTTTGTGATCTCACATCTAAAGATCAGAGGGAGGAGCTCATAAGGACTGTCTCATCTGTTTTTGATGGCAAGCTTAACATTCTTGTAAATAATGCTGGAACAGTTACTCTTAGGAATGCTACAGATTATACTTTAGAAGATTTCTCAACTATGATGAGCACCAATGTAGAATCTCCCTTCCATCTTTGCCAACTTGCACACCCTCTCTTGAAGGCCTCAGGAAATGCAAGTATAGTATTTGTCTCCTCAGTTGGTGGTATGAAAGCTCTACCTAAAACATCTGCCTATGCAGCAACCAAGGGAGCAGTGATCCAGATTGTTAAGAATTTGGCATGTGAATGGGCAAAAGACAACATTCGCACAAACTCTGTGGCTCCATGGGCTGTCAACACCGGAGTTAAACCCGACTCTGATGACCATTCGGATGATTACAGACGGCTAATAGGTCGAACTCCCATCTGCCGCCCTGCACAGCCTAATGAAGTTTCATCGTTGGTGACTTTCCTTTGCCTTCCGGCTGCTTCTTACATAACTGGACAAGTCATTAGCATCGATGGAGGATTTACAGTTAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.9

Weight (kDa)

6.95

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 205	1.3e-50	short chain dehydrogenase
KR	PF08659	15 - 168	1.8e-14	KR domain
adh_short_C2	PF13561	23 - 256	1.8e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	664, 774
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	164, 188, 412
AluBI	AGCT	4 cut(s)	97, 238, 274, 467
AluI	AGCT	4 cut(s)	97, 238, 274, 467
Alw21I	GWGCWC	2 cut(s)	240, 362
Alw26I	GTCTC	3 cut(s)	33, 256, 448
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	491, 719
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	709
AxyI	CCTNAGG	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	240, 362
BbvI	GCAGC	2 cut(s)	503, 706
BccI	CCATC	4 cut(s)	260, 390, 665, 749
BceAI	ACGGC	2 cut(s)	68, 653
BcoDI	GTCTC	3 cut(s)	33, 256, 448
BfaI	CTAG	1 cut(s)	781
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	3 cut(s)	492, 664, 720
BlsI	GCNGC	3 cut(s)	493, 665, 721
BmiI	GGNNCC	2 cut(s)	64, 576
BmsI	GCATC	1 cut(s)	759
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
Bsa29I	ATCGAT	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	498, 578
BsaWI	WCCGGW	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	739
Bse21I	CCTNAGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	498, 578
BseGI	GGATG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	213, 432, 462
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	3 cut(s)	107, 248, 436
BseXI	GCAGC	2 cut(s)	503, 706
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	2 cut(s)	240, 362
BsiSI	CCGG	2 cut(s)	594, 716
BsmAI	GTCTC	3 cut(s)	33, 256, 448
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	240, 362
Bsp143I	GATC	3 cut(s)	208, 223, 510
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	2 cut(s)	664, 774
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	212, 431, 461
BspDI	ATCGAT	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	64, 576
BspPI	GGATC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	498, 578
BssMI	GATC	3 cut(s)	208, 223, 510
BssT1I	CCWWGG	2 cut(s)	498, 578
Bst4CI	ACNGT	4 cut(s)	118, 250, 304, 769
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	99, 272
BstDEI	CTNAG	4 cut(s)	199, 311, 418, 448
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	211, 226, 513
BstMAI	GTCTC	3 cut(s)	33, 256, 448
BstMBI	GATC	3 cut(s)	208, 223, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 581
BstNSI	RCATGY	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	503, 706
Bsu15I	ATCGAT	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	99, 272
CfoI	GCGC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	119
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	3 cut(s)	152, 534, 579
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	4 cut(s)	199, 311, 418, 448
DpnI	GATC	3 cut(s)	210, 225, 512
DpnII	GATC	3 cut(s)	208, 223, 510
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	498, 578
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	498, 578
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	498, 578
FaeI	CATG	3 cut(s)	155, 537, 582
FatI	CATG	3 cut(s)	151, 533, 578
FauNDI	CATATG	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	492, 664, 720
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	492, 664, 720
FspBI	CTAG	1 cut(s)	781
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	492, 664, 720
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	594, 716
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	155, 537, 582
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	160, 371, 608
HpaII	CCGG	2 cut(s)	594, 716
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	228, 613, 625
Hpy188III	TCNNGA	4 cut(s)	164, 409, 420, 514
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	3 cut(s)	388, 406, 722
HpyCH4III	ACNGT	4 cut(s)	118, 250, 304, 769
HpyCH4V	TGCA	5 cut(s)	101, 398, 428, 491, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 581
HpyF3I	CTNAG	4 cut(s)	199, 311, 418, 448
Hsp92II	CATG	3 cut(s)	155, 537, 582
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	208, 223, 510
LmnI	GCTCC	5 cut(s)	94, 153, 235, 503, 580
LpnPI	CCDG	9 cut(s)	42, 87, 282, 405, 527, 607, 681, 720, 729
Lsp1109I	GCAGC	2 cut(s)	503, 706
LweI	GCATC	1 cut(s)	759
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	3 cut(s)	52, 304, 697
MalI	GATC	3 cut(s)	210, 225, 512
MboI	GATC	3 cut(s)	208, 223, 510
MboII	GAAGA	2 cut(s)	184, 350
MhlI	GDGCHC	2 cut(s)	240, 362
MluCI	AATT	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	602
MnlI	CCTC	8 cut(s)	85, 150, 222, 226, 414, 427, 457, 752
MseI	TTAA	3 cut(s)	276, 522, 600
MslI	CAYNNNNRTG	2 cut(s)	538, 624
MspI	CCGG	2 cut(s)	594, 716
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	491, 581
NcoI	CCATGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	3 cut(s)	208, 223, 510
NlaIII	CATG	3 cut(s)	155, 537, 582
NlaIV	GGNNCC	2 cut(s)	64, 576
NmuCI	GTSAC	1 cut(s)	697
NspI	RCATGY	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	416
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	160, 371
PkrI	GCNGC	3 cut(s)	493, 665, 721
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	64, 576
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	538, 624
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	276, 522, 600
SatI	GCNGC	3 cut(s)	492, 664, 720
Sau3AI	GATC	3 cut(s)	208, 223, 510
SchI	GAGTC	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	240, 362
SetI	ASST	9 cut(s)	26, 40, 61, 99, 240, 276, 469, 475, 649
SfaNI	GCATC	1 cut(s)	759
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	538, 624
Sse9I	AATT	1 cut(s)	526
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	664, 774
SspMI	CTAG	1 cut(s)	781
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	498, 578
TaaI	ACNGT	4 cut(s)	118, 250, 304, 769
TaqI	TCGA	4 cut(s)	12, 133, 649, 753
TasI	AATT	1 cut(s)	526
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	160, 371
Tru1I	TTAA	3 cut(s)	276, 522, 600
Tru9I	TTAA	3 cut(s)	276, 522, 600
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	2 cut(s)	491, 719
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	3 cut(s)	476, 678, 696
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	513
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.