Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

21805935 .. 21807430

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCTGGGTTCAAAAGCCAAAGGTGGTCCCTTAAGGGTATGACTGCACTCGTCACCGGTGGAACTAGAGGCATTGGATATGCCATTGTCGAAGAACTAGCAGGACTTGGGGCAACAGTGCATACCTGTGCTCGTAACAAGGAAATGATCGATGAGAGGGTAAATAATGCTGCAATAGTCACACTCAGAGGAGCTACAGATTATAGTTTAGAAGATTTCTCAAGTATGATGAGCAGCAATGTTGAATCTCCCTACCATCTTTGTCAACTAGCACATCCTCTTCTGAAGGCATCAGGAAATGGAAGCATTATATTTGTCTCCTCTATTGCTGGTATAATAGCTCTGCCTAAACTCTCCGCCTATGCAGCAACCAAAGGAGCTATCATCCAGATTTCAAAGAATTTGGCATGTGAATGGGCAAAAGACAACATTCGAACAAATACTGTAGCACCATGGGCAGTCAACACTGGGGCAGCAGCAGTTGAACCGGATGAGCATCGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTCGTCGCCTTGCAGACCCTAATGAAATTTCTTCTCTGGTGACTTTTCTTTGCCTCCCAGCTGCTTCTTACATCAATGGACAAGTTGTTAGAATTGGAGGATTTACAGTTGGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

218

Amino Acids

23.3

Weight (kDa)

8.72

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 51	1.3e-06	short chain dehydrogenase
adh_short_C2	PF13561	49 - 210	3.7e-37	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	53 - 160	3.5e-26	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	400, 561
AcuI	CTGAAG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	32
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	13, 245, 396, 485
AluBI	AGCT	5 cut(s)	194, 341, 380, 524, 596
AluI	AGCT	5 cut(s)	194, 341, 380, 524, 596
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	322
ApeKI	GCWGC	6 cut(s)	170, 234, 365, 473, 476, 596
ApoI	RAATTY	2 cut(s)	400, 561
AsiGI	ACCGGT	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	46, 586
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	6 cut(s)	157, 246, 377, 485, 488, 583
BccI	CCATC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	4 cut(s)	66, 98, 269, 655
BfmI	CTRYAG	2 cut(s)	195, 444
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	6 cut(s)	171, 235, 366, 474, 477, 597
BlsI	GCNGC	6 cut(s)	172, 236, 367, 475, 478, 598
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	299, 505
BmuI	ACTGGG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	452
BsaWI	WCCGGW	2 cut(s)	56, 487
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	3 cut(s)	274, 384, 496
BseJI	GATNNNNATC	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	204, 310
BseXI	GCAGC	6 cut(s)	157, 246, 377, 485, 488, 583
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	30
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	57, 488
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	433
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	452
Bst4CI	ACNGT	3 cut(s)	118, 445, 643
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	274, 384, 496
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 455
BstNSI	RCATGY	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	195, 444
BstV1I	GCAGC	6 cut(s)	157, 246, 377, 485, 488, 583
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	274, 384, 496
BtsIMutI	CAGTG	2 cut(s)	123, 465
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	150
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	2 cut(s)	408, 453
CviJI	RGCY	7 cut(s)	18, 194, 341, 380, 517, 524, 596
CviKI_1	RGCY	7 cut(s)	18, 194, 341, 380, 517, 524, 596
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	2 cut(s)	411, 456
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	2 cut(s)	407, 452
Fnu4HI	GCNGC	6 cut(s)	171, 235, 366, 474, 477, 597
FokI	GGATG	3 cut(s)	261, 371, 503
Fsp4HI	GCNGC	6 cut(s)	171, 235, 366, 474, 477, 597
FspBI	CTAG	4 cut(s)	66, 98, 269, 655
GluI	GCNGC	6 cut(s)	171, 235, 366, 474, 477, 597
GsaI	CCCAGC	1 cut(s)	596
HapII	CCGG	2 cut(s)	57, 488
Hin1II	CATG	2 cut(s)	411, 456
HincII	GTYRAC	2 cut(s)	266, 463
HindII	GTYRAC	2 cut(s)	266, 463
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	57, 488
HphI	GGTGA	2 cut(s)	46, 586
Hpy166II	GTNNAC	2 cut(s)	266, 463
Hpy188I	TCNGA	3 cut(s)	188, 285, 512
Hpy188III	TCNNGA	3 cut(s)	294, 388, 500
Hpy8I	GTNNAC	2 cut(s)	266, 463
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	280, 507
HpyCH4III	ACNGT	3 cut(s)	118, 445, 643
HpyCH4V	TGCA	5 cut(s)	47, 121, 173, 365, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 455
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	411, 456
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	191, 377
Lsp1109I	GCAGC	6 cut(s)	157, 246, 377, 485, 488, 583
LweI	GCATC	2 cut(s)	299, 505
MaeI	CTAG	4 cut(s)	66, 98, 269, 655
MaeIII	GTNAC	4 cut(s)	52, 134, 178, 574
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	104, 224, 272, 558
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	3 cut(s)	400, 561, 627
MnlI	CCTC	7 cut(s)	62, 150, 182, 288, 331, 599, 626
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	3 cut(s)	126, 412, 501
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	2 cut(s)	57, 488
MwoI	GCNNNNNNNGC	2 cut(s)	365, 455
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	411, 456
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	3 cut(s)	52, 178, 574
NspI	RCATGY	1 cut(s)	411
NspV	TTCGAA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	6 cut(s)	172, 236, 367, 475, 478, 598
PspFI	CCCAGC	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	596
RseI	CAYNNNNRTG	3 cut(s)	126, 412, 501
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	6 cut(s)	171, 235, 366, 474, 477, 597
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	7 cut(s)	26, 128, 196, 343, 382, 526, 598
SfaNI	GCATC	2 cut(s)	299, 505
SfcI	CTRYAG	2 cut(s)	195, 444
SfuI	TTCGAA	1 cut(s)	433
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	126, 412, 501
SmlI	CTYRAG	2 cut(s)	32, 220
SmoI	CTYRAG	2 cut(s)	32, 220
Sse9I	AATT	3 cut(s)	400, 561, 627
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	4 cut(s)	66, 98, 269, 655
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	3 cut(s)	118, 445, 643
TaqI	TCGA	4 cut(s)	90, 150, 433, 526
TasI	AATT	3 cut(s)	400, 561, 627
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	123, 472
TseFI	GTSAC	3 cut(s)	52, 178, 574
TseI	GCWGC	6 cut(s)	170, 234, 365, 473, 476, 596
Tsp45I	GTSAC	3 cut(s)	52, 178, 574
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	2 cut(s)	123, 472
Vha464I	CTTAAG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	400, 561
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	4 cut(s)	66, 98, 269, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.