Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

37281542 .. 37283192

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGGGAAAGGTTTCAACAGTGAAAGATGGTCTCTAAAAGGCAAGACCGCCCTCGTCACTGGTGGAACGAAAGGCATCGGGGAGGAGCTGTTGGAGACTGTCTCCTCTGTTTTCGATGGAAAGCTTAACATCCTTGTAAATAATGCAGCAACAGTCACACTCAGAAATACTACAGACTATTCTTTGGAAGATTTTTCAAGCATGATGAGTACCAATGTCGAATCTCCTTACCACCTTTGTCAACTTGCACATCCTCTCTTGAAGGCCTCAGGCAATGGAAGCATTGTATTCATCTCCTCCATCGCTGGTATAAAAGCTCTGCCTAGACTATCTGCCTACGCGGCAACAAAAAGCGCTGTCATCCAGATTTCAAAGAATTTGGCTTGTGAATGGGCACAGGATAGAATCCGGGCAAACACTGTAGCACCATGGGCAGTCAACACCGGGGCTAAACCTGATAATGATGAGCATTCTGCTGACTTTAGACGCTTAATAGGTCGAACTCCCATCCGTCGCGTTGCCGAGCCTAATGAAATTTCATCCTTGGTGACTTTCCTCTGCCTTCCTGCTGCTTCATACATCACTGGACAAGTTGTTAGTATTGATGGAGGATTTACAGTTAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

211

Amino Acids

22.52

Weight (kDa)

8.45

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	29 - 207	1.4e-44	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	31 - 156	4.7e-31	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	344, 519
AciI	CCGC	3 cut(s)	51, 344, 627
AcsI	RAATTY	2 cut(s)	379, 537
AfaI	GTAC	1 cut(s)	214
AfeI	AGCGCT	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	19, 201, 265, 375
AluBI	AGCT	3 cut(s)	91, 127, 320
AluI	AGCT	3 cut(s)	91, 127, 320
Alw26I	GTCTC	3 cut(s)	39, 92, 109
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	149, 572
ApoI	RAATTY	2 cut(s)	379, 537
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	359
AsuC2I	CCSGG	2 cut(s)	413, 448
AsuHPI	GGTGA	1 cut(s)	562
AxyI	CCTNAGG	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	161, 559
BccI	CCATC	5 cut(s)	24, 113, 311, 518, 602
BcnI	CCSGG	2 cut(s)	413, 448
BcoDI	GTCTC	3 cut(s)	39, 92, 109
BfaI	CTAG	2 cut(s)	327, 634
BfmI	CTRYAG	2 cut(s)	174, 423
BfoI	RGCGCY	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	344
BisI	GCNGC	3 cut(s)	150, 345, 573
BlsI	GCNGC	3 cut(s)	151, 346, 574
Bme1390I	CCNGG	2 cut(s)	413, 448
BmrFI	CCNGG	2 cut(s)	413, 448
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuMI	CCSGG	2 cut(s)	413, 448
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	431, 447, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse1I	ACTGG	2 cut(s)	67, 592
Bse21I	CCTNAGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	283
BseDI	CCNNGG	3 cut(s)	431, 447, 546
BseGI	GGATG	5 cut(s)	132, 253, 363, 510, 542
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	178, 285
BseNI	ACTGG	2 cut(s)	67, 592
BseRI	GAGGAG	3 cut(s)	97, 101, 289
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	161, 559
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	2 cut(s)	344, 519
BshFI	GGCC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	412, 447
BsmAI	GTCTC	3 cut(s)	39, 92, 109
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	3 cut(s)	51, 344, 627
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	177, 284
BspFNI	CGCG	2 cut(s)	344, 519
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	67, 592
BssECI	CCNNGG	3 cut(s)	431, 447, 546
BssT1I	CCWWGG	2 cut(s)	431, 546
Bst4CI	ACNGT	5 cut(s)	23, 103, 157, 424, 622
BstDEI	CTNAG	2 cut(s)	164, 271
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	5 cut(s)	132, 253, 363, 510, 542
BstFNI	CGCG	2 cut(s)	344, 519
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstMAI	GTCTC	3 cut(s)	39, 92, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 344, 434
BstSCI	CCNGG	2 cut(s)	411, 446
BstSFI	CTRYAG	2 cut(s)	174, 423
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	2 cut(s)	344, 519
BstV1I	GCAGC	2 cut(s)	161, 559
Bsu36I	CCTNAGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	5 cut(s)	132, 253, 363, 510, 542
BtsIMutI	CAGTG	4 cut(s)	28, 60, 420, 585
CfoI	GCGC	1 cut(s)	359
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	205, 432
CviJI	RGCY	8 cut(s)	5, 91, 127, 269, 320, 386, 452, 529
CviKI_1	RGCY	8 cut(s)	5, 91, 127, 269, 320, 386, 452, 529
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	164, 271
Eco130I	CCWWGG	2 cut(s)	431, 546
Eco147I	AGGCCT	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	431, 546
ErhI	CCWWGG	2 cut(s)	431, 546
FaeI	CATG	2 cut(s)	208, 435
FaiI	YATR	4 cut(s)	206, 314, 433, 580
FatI	CATG	2 cut(s)	204, 431
Fnu4HI	GCNGC	3 cut(s)	150, 345, 573
FokI	GGATG	5 cut(s)	119, 240, 350, 497, 529
Fsp4HI	GCNGC	3 cut(s)	150, 345, 573
FspBI	CTAG	2 cut(s)	327, 634
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	150, 345, 573
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	412, 447
HgaI	GACGC	1 cut(s)	498
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	208, 435
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	245, 442
HindII	GTYRAC	2 cut(s)	245, 442
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	224, 408
HpaII	CCGG	2 cut(s)	412, 447
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	245, 442
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	262, 367
Hpy8I	GTNNAC	2 cut(s)	245, 442
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	259, 575
HpyCH4III	ACNGT	5 cut(s)	23, 103, 157, 424, 622
HpyCH4V	TGCA	2 cut(s)	149, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 344, 434
HpyF3I	CTNAG	2 cut(s)	164, 271
Hsp92II	CATG	2 cut(s)	208, 435
HspAI	GCGC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	161, 559
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	327, 634
MaeIII	GTNAC	3 cut(s)	58, 157, 550
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	379, 537
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	65, 79, 118, 267, 280, 310, 569, 605
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	129, 494
MspI	CCGG	2 cut(s)	412, 447
MspR9I	CCNGG	2 cut(s)	413, 448
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	2 cut(s)	344, 519
MwoI	GCNNNNNNNGC	3 cut(s)	282, 344, 434
NciI	CCSGG	2 cut(s)	413, 448
NcoI	CCATGG	1 cut(s)	431
NlaIII	CATG	2 cut(s)	208, 435
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	3 cut(s)	58, 157, 550
PceI	AGGCCT	1 cut(s)	269
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	224, 408
PkrI	GCNGC	3 cut(s)	151, 346, 574
PspFI	CCCAGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	129, 494
SatI	GCNGC	3 cut(s)	150, 345, 573
ScrFI	CCNGG	2 cut(s)	413, 448
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	16, 93, 129, 240, 322, 460, 502
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	174, 423
Sse9I	AATT	2 cut(s)	379, 537
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	3 cut(s)	51, 344, 627
SspMI	CTAG	2 cut(s)	327, 634
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	411, 446
StyI	CCWWGG	2 cut(s)	431, 546
TaaI	ACNGT	5 cut(s)	23, 103, 157, 424, 622
TaqI	TCGA	3 cut(s)	117, 222, 502
TasI	AATT	2 cut(s)	379, 537
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	224, 408
Tru1I	TTAA	2 cut(s)	129, 494
Tru9I	TTAA	2 cut(s)	129, 494
TscAI	CASTG	4 cut(s)	28, 67, 427, 592
TseFI	GTSAC	3 cut(s)	58, 157, 550
TseI	GCWGC	2 cut(s)	149, 572
Tsp45I	GTSAC	3 cut(s)	58, 157, 550
TspDTI	ATGAA	4 cut(s)	283, 531, 549, 567
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	4 cut(s)	28, 67, 427, 592
XapI	RAATTY	2 cut(s)	379, 537
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	327, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.