Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

16849839 .. 16851292

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTTTCAACAGCCAAAGATGGTCTCTAAAGGGTACGACCGCCCTCGTCACCGGTGGAACTAAAGGCATCGGATATGCGACAGTAGAAGAGCTAGCGGGACTTGGAGCAACCGTACATACTTGTGCTCGCAACGAAGCACAGATTGTTGAGAGGCTTCGAGAATGGGAAGATAAGGGATTTAAAGTGACTGGATCAGTTTGTGACCTCACCTCTAAAGCTCAAAGGGAAAACCTCATCAAAACCGTCTCCTCAATTTTCAACGGCAAGCTTAACATCCTTGTAAATAATGCTGCAACATGTACTCTCAGGAGTACCGCAGATTACACTTTGGAAGATTTTTCAAGCATGATGAGCACCAATGTTGAATCTCCCTACCATCTGTGTCAACTTGCATATCCTCTCTTGAAGGCCTCAGAAAACGCAAGTATTGTATTTGTCTCCTCTATTGCTGGTCTGAAAGCTCTACCCAGACTATCTGCCTATGCAGCAACCAAAGGAGCAGTGATACAGATTGCAAAAAATTTGGCATGTGAATGGGCAAAAGACAACATTCGCACAAACACTGTGGCACCATGGGCTGTCAACACCGGGGCTAAAGTCGAAAATGATGGTCATGCTGAAGATTTCAGACGGCTAATAGGTAGAACTCCCATCCCTCGTCTTGCACAACCTAATGAAATTTCGTCTCTGGTGTCCTTCCTTTGCCTCCCTGCTGCTTCTTTCATCAATGGACAAGTCATTAGCGTTGATGGAGGGTTCACAGTTAGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.85

Weight (kDa)

8.51

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	11 - 200	4.8e-07	SDR-like rossmann domain
adh_short	PF00106	15 - 202	2.3e-49	short chain dehydrogenase
KR	PF08659	15 - 168	5.7e-14	KR domain
adh_short_C2	PF13561	23 - 256	4.7e-55	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	3 cut(s)	45, 101, 321
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	526, 684
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	4 cut(s)	40, 120, 307, 319
AflIII	ACRYGT	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	13, 265, 348, 371, 412
AluBI	AGCT	4 cut(s)	97, 224, 274, 467
AluI	AGCT	4 cut(s)	97, 224, 274, 467
Alw21I	GWGCWC	2 cut(s)	133, 362
Alw26I	GTCTC	4 cut(s)	33, 256, 448, 696
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	2 cut(s)	526, 684
AsiGI	ACCGGT	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	46, 205
AsuNHI	GCTAGC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	133, 362
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	5 cut(s)	18, 390, 608, 665, 749
BceAI	ACGGC	2 cut(s)	283, 653
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	4 cut(s)	33, 256, 448, 696
BfaI	CTAG	2 cut(s)	98, 781
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
Bme1390I	CCNGG	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	81
BmtI	GCTAGC	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	578, 594
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	578, 594
BseGI	GGATG	2 cut(s)	279, 657
BseMII	CTCAG	2 cut(s)	325, 432
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	244, 436
BseXI	GCAGC	3 cut(s)	283, 503, 706
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	2 cut(s)	133, 362
BsiSI	CCGG	2 cut(s)	57, 594
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	4 cut(s)	33, 256, 448, 696
BsmBI	CGTCTC	2 cut(s)	256, 696
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	133, 362
Bsp143I	GATC	1 cut(s)	197
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	3 cut(s)	45, 101, 321
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	324, 431
BspLI	GGNNCC	1 cut(s)	576
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	578, 594
BssMI	GATC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	5 cut(s)	88, 118, 250, 571, 769
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	99, 133, 272
BstDEI	CTNAG	2 cut(s)	311, 418
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	279, 657
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	4 cut(s)	33, 256, 448, 696
BstMBI	GATC	1 cut(s)	197
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
BstNSI	RCATGY	2 cut(s)	306, 537
BstSCI	CCNGG	1 cut(s)	593
BstV1I	GCAGC	3 cut(s)	283, 503, 706
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	279, 657
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 567
Cac8I	GCNNGC	3 cut(s)	99, 133, 272
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	39, 119, 306, 318
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	5 cut(s)	303, 352, 534, 579, 620
CviQI	GTAC	4 cut(s)	39, 119, 306, 318
DdeI	CTNAG	2 cut(s)	311, 418
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	578
Eco147I	AGGCCT	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	2 cut(s)	256, 696
FaeI	CATG	5 cut(s)	306, 355, 537, 582, 623
FaiI	YATR	9 cut(s)	81, 123, 304, 353, 400, 489, 535, 580, 621
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	5 cut(s)	302, 351, 533, 578, 619
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 644
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	2 cut(s)	98, 781
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	57, 594
Hin1II	CATG	5 cut(s)	306, 355, 537, 582, 623
HincII	GTYRAC	2 cut(s)	392, 589
HindII	GTYRAC	2 cut(s)	392, 589
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	57, 594
HphI	GGTGA	2 cut(s)	46, 205
Hpy166II	GTNNAC	3 cut(s)	392, 589, 765
Hpy188I	TCNGA	4 cut(s)	77, 421, 462, 635
Hpy188III	TCNNGA	3 cut(s)	164, 313, 409
Hpy8I	GTNNAC	3 cut(s)	392, 589, 765
HpyAV	CCTTC	2 cut(s)	406, 712
HpyCH4III	ACNGT	5 cut(s)	88, 118, 250, 571, 769
HpyCH4V	TGCA	5 cut(s)	299, 398, 491, 521, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
HpyF3I	CTNAG	2 cut(s)	311, 418
Hsp92II	CATG	5 cut(s)	306, 355, 537, 582, 623
Kzo9I	GATC	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	110, 503
LpnPI	CCDG	8 cut(s)	70, 180, 298, 441, 487, 607, 680, 729
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	98, 781
MaeIII	GTNAC	3 cut(s)	52, 190, 206
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	4 cut(s)	104, 185, 350, 638
MhlI	GDGCHC	2 cut(s)	133, 362
MluCI	AATT	3 cut(s)	258, 526, 684
MseI	TTAA	2 cut(s)	186, 276
MslI	CAYNNNNRTG	2 cut(s)	126, 538
MspI	CCGG	2 cut(s)	57, 594
MspR9I	CCNGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	306, 355, 537, 582, 623
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	3 cut(s)	52, 190, 206
NspI	RCATGY	2 cut(s)	306, 537
PceI	AGGCCT	1 cut(s)	416
PciI	ACATGT	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	371
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	298, 493, 721
PscI	ACATGT	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	576
RsaI	GTAC	4 cut(s)	40, 120, 307, 319
RsaNI	GTAC	4 cut(s)	39, 119, 306, 318
RseI	CAYNNNNRTG	2 cut(s)	126, 538
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	186, 276
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	133, 362
SfaNI	GCATC	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	126, 538
Sse9I	AATT	3 cut(s)	258, 526, 684
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	45, 101, 321
SspMI	CTAG	2 cut(s)	98, 781
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	593
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	5 cut(s)	88, 118, 250, 571, 769
TaqI	TCGA	2 cut(s)	163, 606
TasI	AATT	3 cut(s)	258, 526, 684
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	186, 276
Tru9I	TTAA	2 cut(s)	186, 276
TscAI	CASTG	2 cut(s)	513, 574
TseFI	GTSAC	3 cut(s)	52, 190, 206
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	3 cut(s)	52, 190, 206
TspDTI	ATGAA	2 cut(s)	696, 718
TspRI	CASTG	2 cut(s)	513, 574
XapI	RAATTY	2 cut(s)	526, 684
XceI	RCATGY	2 cut(s)	306, 537
XspI	CTAG	2 cut(s)	98, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.