Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

22873155 .. 22874282

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1148600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAGGTTTTGACAGCTATAGATGGTCACTAAAGGGTATGACTGCCCTCATCATCAATGGAACCAAAGGCATAGGCAAAACCCAGATTCTTGAGAGACTTCAACAATGGGAAAACAAGGGATTCAAAGTGACTGGCTCAGTTTGTGATCTCACCTCTAAAGCACAAAGAGAGAACCTCATCAAAACTGTCTCCTCTATTTTTGATGGAAAACTTAGCATCCTTGTAAATAGTGCTGCAACATGCAAACTTAGAGGAACCACATATTACACTTTGGAAGATTTCTCAACTATGATGGAAACCAATGTTGAATCCCCCTACCATCTTTCTCAACTTGCACACCCTCTCTTAAAGGCCTTTAGAAATGTGAGTATTGTCTTCGTTGCCTCCATTGTCGGTGTAGTCATCCAAATTTCGAAGAACTTGGCATATGAATGGGCAAAAGACAACATTTGTACTAATGTTGTGGTGCCATGGGCTGTCAACATCGGAGTTAAAGTTGAATCTGACTGTCATTCTGATGATTTCAGACGCCTAATAGGTCGAACTCCCATCTGTCGCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.13

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	12 - 136	2.5e-06	KR domain
adh_short	PF00106	31 - 145	1.1e-15	short chain dehydrogenase
adh_short_C2	PF13561	33 - 151	1.3e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	104, 127, 311, 503
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	91, 196
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	5 cut(s)	18, 200, 289, 330, 560
BcoDI	GTCTC	2 cut(s)	91, 196
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	64, 259, 471
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	219, 405
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	469
BsmAI	GTCTC	2 cut(s)	91, 196
BsnI	GGCC	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	473
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	64, 259, 471
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	532
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	190, 512
BstACI	GRCGYC	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	139, 215, 251
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	219, 405
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	91, 196
BstMBI	GATC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	219, 405
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	2 cut(s)	243, 474
CviJI	RGCY	4 cut(s)	18, 138, 356, 479
CviKI_1	RGCY	4 cut(s)	18, 138, 356, 479
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	3 cut(s)	139, 215, 251
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	246, 477
FatI	CATG	2 cut(s)	242, 473
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	206, 392
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	356
HgaI	GACGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	246, 477
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	88, 123, 311, 503
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	491, 508, 520, 530
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	190, 512
HpyCH4V	TGCA	4 cut(s)	239, 246, 338, 566
HpyF3I	CTNAG	3 cut(s)	139, 215, 251
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	246, 477
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	2 cut(s)	98, 120
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	27, 130
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	3 cut(s)	290, 370, 430
MluCI	AATT	1 cut(s)	411
MnlI	CCTC	7 cut(s)	59, 166, 188, 205, 248, 354, 397
MseI	TTAA	2 cut(s)	350, 495
MslI	CAYNNNNRTG	2 cut(s)	433, 519
NcoI	CCATGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	246, 477
NlaIV	GGNNCC	3 cut(s)	64, 259, 471
NmuCI	GTSAC	2 cut(s)	27, 130
NspI	RCATGY	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	356
PfeI	GAWTC	4 cut(s)	88, 123, 311, 503
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	64, 259, 471
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	2 cut(s)	433, 519
SaqAI	TTAA	2 cut(s)	350, 495
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	148
SetI	ASST	5 cut(s)	10, 20, 158, 180, 544
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	433, 519
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	411
SseBI	AGGCCT	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	190, 512
TaqI	TCGA	2 cut(s)	416, 544
TasI	AATT	1 cut(s)	411
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	88, 123, 311, 503
Tru1I	TTAA	2 cut(s)	350, 495
Tru9I	TTAA	2 cut(s)	350, 495
TseFI	GTSAC	2 cut(s)	27, 130
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	27, 130
TspDTI	ATGAA	1 cut(s)	447
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.