Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

22219294 .. 22220752

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1134900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTTTCGACAGTCAAAGATGGTCTCTAAAGGGCACGACTGCTCTCGTCACCGGCGGAACCAAAGGCATCGGATATGCCATTGTGGAAGAGCTGGCAGGACTTGGAGCAACCGTGCATACCTGTGCCCGTAACGAAGTGCAGATTCTTGAGAGGCTTCAAGAATGGGAAAGTAAGGGATTCAAAGTAACTGGCTCGGTTTGTGACTTAACCTCTAAAGCACAAAGGGAGAACCTCGTCAAAACCGTCTCCTCTATTTTTGATGGCAAACTTAACATTCTTGTAAATAGTGCTGCGACTTGCACACTTAGAGGAACTACAGATTACACTTTGGAAGATTTCTCAAGTATGATGGAAACCAATGTTGAATCTCCCTACCATCTTTCTCAACTTGCAAATCCTCTTTTGAAGGCCTCAGGAAATGCAAGTATTGTCTTTGTTGCCTCCATTGCCGGTGTAGTAGCTCTACCGAAACTCTCTGCCTATGCAGCAACAAAAAGTGCAGTCATCCAAATTTCAAAGAACTTGGCATGTGAATGGGCAAAAGACGGCATTCGTACTAATGCTGTGGCGCCATGGGCTGTCAACACCGGAGTTAAAGTTGAATCTGATGGTCATGCTGATGATTTCCGACGCCTAATAGGTCGAACTCCCATCCGCCGTCTTGCACAGCCTAATGAAATTTCATCTCTCGTCACCTTCCTTTGCCTGCCAGCTGCTTCTTACATCAATGGACAAGTTATTAGTGTTGATGGAGGATTTACAGTTAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.66

Weight (kDa)

7.62

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	11 - 214	8.5e-07	SDR-like rossmann domain
adh_short	PF00106	15 - 203	5.9e-47	short chain dehydrogenase
KR	PF08659	15 - 170	8.9e-14	KR domain
adh_short_C2	PF13561	23 - 256	1.2e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	3 cut(s)	60, 661, 774
AcsI	RAATTY	2 cut(s)	516, 684
AcyI	GRCGYC	2 cut(s)	575, 637
AfaI	GTAC	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	164, 187, 371, 412, 522, 608
AluBI	AGCT	3 cut(s)	97, 467, 719
AluI	AGCT	3 cut(s)	97, 467, 719
Alw26I	GTCTC	2 cut(s)	33, 256
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	2 cut(s)	516, 684
AspLEI	GCGC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	46, 691
AxyI	CCTNAGG	1 cut(s)	418
BaeGI	GKGCMC	2 cut(s)	41, 133
BanI	GGYRCC	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	7 cut(s)	18, 260, 349, 390, 608, 665, 749
BceAI	ACGGC	2 cut(s)	568, 648
BcoDI	GTCTC	2 cut(s)	33, 256
BfaI	CTAG	1 cut(s)	781
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmiI	GGNNCC	2 cut(s)	64, 576
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	173, 331
BsaHI	GRCGYC	2 cut(s)	575, 637
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 588, 618
Bse118I	RCCGGY	2 cut(s)	56, 455
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	510, 657
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	41, 133
BseXI	GCAGC	3 cut(s)	283, 503, 706
BsgI	GTGCAG	2 cut(s)	164, 525
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	57, 456, 594
BsmAI	GTCTC	2 cut(s)	33, 256
BsmBI	CGTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	41, 133
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	3 cut(s)	60, 661, 774
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	64, 576
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	56, 455
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	2 cut(s)	56, 455
BssECI	CCNNGG	1 cut(s)	578
BssNI	GRCGYC	2 cut(s)	575, 637
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	17, 118, 250, 769
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	575, 637
BstC8I	GCNNGC	3 cut(s)	99, 713, 717
BstDEI	CTNAG	2 cut(s)	311, 418
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	510, 657
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	33, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
BstNSI	RCATGY	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	2 cut(s)	41, 133
BstV1I	GCAGC	3 cut(s)	283, 503, 706
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	510, 657
Cac8I	GCNNGC	3 cut(s)	99, 713, 717
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	2 cut(s)	56, 455
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	3 cut(s)	534, 579, 620
CviJI	RGCY	8 cut(s)	97, 160, 198, 416, 467, 584, 676, 719
CviKI_1	RGCY	8 cut(s)	97, 160, 198, 416, 467, 584, 676, 719
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	311, 418
DinI	GGCGCC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	2 cut(s)	75, 650
Eco130I	CCWWGG	1 cut(s)	578
Eco147I	AGGCCT	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	578
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	537, 582, 623
FaiI	YATR	7 cut(s)	81, 123, 353, 489, 535, 580, 621
FatI	CATG	3 cut(s)	533, 578, 619
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	497, 644
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	1 cut(s)	781
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	57, 456, 594
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	2 cut(s)	575, 637
Hin1II	CATG	3 cut(s)	537, 582, 623
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	4 cut(s)	148, 183, 371, 608
HpaII	CCGG	3 cut(s)	57, 456, 594
HphI	GGTGA	2 cut(s)	46, 691
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	77, 613, 635
Hpy188III	TCNNGA	3 cut(s)	152, 164, 420
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	639
HpyAV	CCTTC	2 cut(s)	406, 712
HpyCH4III	ACNGT	4 cut(s)	17, 118, 250, 769
HpyCH4V	TGCA	8 cut(s)	121, 145, 306, 398, 428, 491, 506, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
HpyF3I	CTNAG	2 cut(s)	311, 418
Hsp92I	GRCGYC	2 cut(s)	575, 637
Hsp92II	CATG	3 cut(s)	537, 582, 623
HspAI	GCGC	1 cut(s)	575
KasI	GGCGCC	1 cut(s)	574
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	5 cut(s)	52, 134, 190, 206, 697
MboII	GAAGA	2 cut(s)	104, 350
MhlI	GDGCHC	2 cut(s)	41, 133
MluCI	AATT	2 cut(s)	516, 684
Mly113I	GGCGCC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	9 cut(s)	150, 226, 248, 265, 308, 414, 427, 457, 752
MseI	TTAA	3 cut(s)	212, 276, 600
MslI	CAYNNNNRTG	3 cut(s)	126, 538, 624
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	3 cut(s)	57, 456, 594
Mva1269I	GAATGC	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
NarI	GGCGCC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	578
NlaIII	CATG	3 cut(s)	537, 582, 623
NlaIV	GGNNCC	2 cut(s)	64, 576
NmuCI	GTSAC	3 cut(s)	52, 206, 697
NspI	RCATGY	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	4 cut(s)	148, 183, 371, 608
PkrI	GCNGC	3 cut(s)	298, 493, 721
PluTI	GGCGCC	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	64, 576
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	3 cut(s)	126, 538, 624
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	212, 276, 600
SatI	GCNGC	3 cut(s)	297, 492, 720
SduI	GDGCHC	2 cut(s)	41, 133
SetI	ASST	9 cut(s)	10, 99, 128, 218, 240, 469, 649, 704, 721
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	321
SfoI	GGCGCC	1 cut(s)	576
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	3 cut(s)	126, 538, 624
SmlI	CTYRAG	2 cut(s)	152, 346
SmoI	CTYRAG	2 cut(s)	152, 346
Sse9I	AATT	2 cut(s)	516, 684
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	60, 661, 774
SspDI	GGCGCC	1 cut(s)	574
SspMI	CTAG	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	17, 118, 250, 769
TaqI	TCGA	2 cut(s)	12, 649
TasI	AATT	2 cut(s)	516, 684
TfiI	GAWTC	4 cut(s)	148, 183, 371, 608
Tru1I	TTAA	3 cut(s)	212, 276, 600
Tru9I	TTAA	3 cut(s)	212, 276, 600
TseFI	GTSAC	3 cut(s)	52, 206, 697
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	3 cut(s)	52, 206, 697
TspDTI	ATGAA	2 cut(s)	678, 696
XapI	RAATTY	2 cut(s)	516, 684
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.