Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

23428978 .. 23431093

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG246400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATCGATGAGAGGGTTCGAGAGTGGAAGATTAAGGGATTTACCGTGAGTGGTTCAGTTTGTGACCTCACATCTAAATCTCAAAGGGAGGAGCTCATAAAGACTGTCTCATCTGTTTTTGATGGCAAGCTTAGCATCCTTATAAATAATGCTGCAATAGTCACACTCAGAGGAGCTACAGATTATAGTTTAGAAGATTTCTCAAGTATGATGAGCAGCAATGTTGAATCTCCCTACCATCTTTGTCAACTAGCACATCCTCTTCTGAAGGCATCAGGAAATGGAAGCATTATATTTGTGTCCTCTATTGCTGGTATAATAGCTCTGCCTAAACTCTCTGCCTATGCAGCAACCAAAGGAGCTATCATCCAGATTTCAAAGAATTTGGCATGTGAATGGGCAAAAGACAACATTCGGACAAATACTGTAGCACCATGGGCTGTCAACACTGGGGCAGCAGCAGTTGAACCGGATGAGCATCGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTCGTCGCCTTGCAGACCCTAATGAAATTTCATCTCTGGTGACTTTTCTTTGCCTCCCAGCTGCTTCTTACATCAATGGACAAGTTGTTAGCATTGATGGAGGATTTACAGTTAGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

213

Amino Acids

23.01

Weight (kDa)

6.82

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	4 - 119	1.7e-07	KR domain
adh_short	PF00106	7 - 154	1.4e-33	short chain dehydrogenase
adh_short_C2	PF13561	19 - 209	5.4e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	382, 543
AcuI	CTGAAG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	227, 378, 467
AluBI	AGCT	7 cut(s)	94, 130, 176, 323, 362, 506, 578
AluI	AGCT	7 cut(s)	94, 130, 176, 323, 362, 506, 578
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	112
ApeKI	GCWGC	6 cut(s)	152, 216, 347, 455, 458, 578
ApoI	RAATTY	2 cut(s)	382, 543
AsuHPI	GGTGA	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	139, 228, 359, 467, 470, 565
BccI	CCATC	3 cut(s)	116, 246, 608
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	251, 640
BfmI	CTRYAG	2 cut(s)	177, 426
BisI	GCNGC	6 cut(s)	153, 217, 348, 456, 459, 579
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	6 cut(s)	154, 218, 349, 457, 460, 580
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	3 cut(s)	144, 281, 487
BmuI	ACTGGG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	477
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	4 cut(s)	135, 256, 366, 478
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	104, 186
BseXI	GCAGC	6 cut(s)	139, 228, 359, 467, 470, 565
BseYI	CCCAGC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	46, 106, 427, 628
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	131, 167
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	4 cut(s)	135, 256, 366, 478
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 347, 437
BstNSI	RCATGY	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	177, 426
BstV1I	GCAGC	6 cut(s)	139, 228, 359, 467, 470, 565
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	4 cut(s)	135, 256, 366, 478
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	6
CviAII	CATG	2 cut(s)	390, 435
CviJI	RGCY	9 cut(s)	94, 130, 176, 323, 362, 440, 499, 506, 578
CviKI_1	RGCY	9 cut(s)	94, 130, 176, 323, 362, 440, 499, 506, 578
DdeI	CTNAG	2 cut(s)	131, 167
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	393, 438
FaiI	YATR	9 cut(s)	98, 143, 186, 209, 293, 317, 345, 391, 436
FatI	CATG	2 cut(s)	389, 434
Fnu4HI	GCNGC	6 cut(s)	153, 217, 348, 456, 459, 579
FokI	GGATG	4 cut(s)	122, 243, 353, 485
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	153, 217, 348, 456, 459, 579
FspBI	CTAG	2 cut(s)	251, 640
GluI	GCNGC	6 cut(s)	153, 217, 348, 456, 459, 579
GsaI	CCCAGC	1 cut(s)	578
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	2 cut(s)	393, 438
HincII	GTYRAC	2 cut(s)	248, 445
HindII	GTYRAC	2 cut(s)	248, 445
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	248, 445
Hpy188I	TCNGA	4 cut(s)	170, 267, 417, 494
Hpy188III	TCNNGA	4 cut(s)	20, 276, 370, 482
Hpy8I	GTNNAC	2 cut(s)	248, 445
Hpy99I	CGWCG	1 cut(s)	525
HpyAV	CCTTC	2 cut(s)	262, 489
HpyCH4III	ACNGT	4 cut(s)	46, 106, 427, 628
HpyCH4V	TGCA	3 cut(s)	155, 347, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 347, 437
HpyF3I	CTNAG	2 cut(s)	131, 167
Hsp92II	CATG	2 cut(s)	393, 438
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	91, 173, 359
LpnPI	CCDG	7 cut(s)	261, 297, 383, 435, 483, 539, 588
Lsp1109I	GCAGC	6 cut(s)	139, 228, 359, 467, 470, 565
LweI	GCATC	3 cut(s)	144, 281, 487
MaeI	CTAG	2 cut(s)	251, 640
MaeIII	GTNAC	3 cut(s)	62, 160, 556
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	40, 206, 254
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	382, 543
MnlI	CCTC	8 cut(s)	6, 77, 82, 164, 270, 313, 581, 611
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	394, 483
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	132, 347, 437
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	393, 438
NmuCI	GTSAC	3 cut(s)	62, 160, 556
NspI	RCATGY	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	154, 218, 349, 457, 460, 580
PsiI	TTATAA	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	578
RseI	CAYNNNNRTG	2 cut(s)	394, 483
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	6 cut(s)	153, 217, 348, 456, 459, 579
Sau3AI	GATC	1 cut(s)	3
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	69, 96, 132, 178, 325, 364, 508, 580
SfaNI	GCATC	3 cut(s)	144, 281, 487
SfcI	CTRYAG	2 cut(s)	177, 426
SmiMI	CAYNNNNRTG	2 cut(s)	394, 483
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	2 cut(s)	382, 543
SspMI	CTAG	2 cut(s)	251, 640
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	46, 106, 427, 628
TaqI	TCGA	3 cut(s)	6, 19, 508
TasI	AATT	2 cut(s)	382, 543
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	62, 160, 556
TseI	GCWGC	6 cut(s)	152, 216, 347, 455, 458, 578
Tsp45I	GTSAC	3 cut(s)	62, 160, 556
TspDTI	ATGAA	2 cut(s)	537, 555
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	382, 543
XceI	RCATGY	1 cut(s)	393
XspI	CTAG	2 cut(s)	251, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.