Rh3CG240000

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001690
Physical Location & Seq
Reverse (-)
23016718 .. 23017939
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG240000.1

Sequence Viewer

Length: 708 bp
ATGTCTGGGTTCAAAAGCCAAAGGTGGTCCCTTAAGGGTATGACTGCACTCGTCACCGGTGGAACTAGAGGCATTGGATATGCCATTGTCGAAGAACTAGCAGGACTTGGGGCAACAGTGCATACCTGTGCTCGTAACAAGGAAATGATCGATGAGAGGGAGCTCATAAAGACTGTCTCATCTGTTTTTGATGGCAAGCTTAGCATCCTTGTAAATAATGCTGCAATAGTCACACTCAGAGGAGCTACAGATTATAGTTTAGAAGATTTCTCAAGTATGATGAGCAGCAATGTTGAATCTCCCTACCATCTTTGTCAACTAGCACATCCTCTTCTGAAGGCATCAGGAAATGGAAGCATTATATTTGTCTCCTCTATTGCTGGTATAATAGCTCTGCCTAAACTCTCCGCCTATGCAGCAACCAAAGGAGCTATCATCCAGATTTCAAAGAATTTGGCATGTGAATGGGCAAAAGACAACATTCGAACAAATACTGTAGCACCATGGGCAGTCAACACTGGGGCAGCAGCAGTTGAACCGGATGAGCATCGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTCGTCGCCTTGCAGACCCTAATGAAATTTCTTCTCTGGTGACTTTTCTTTGCCTCCCAGCTGCTTCTTACATCAATGGACAAGTTGTTAGAATTGGAGGATTTACAGTTGGTGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

235

Amino Acids

25.13

Weight (kDa)

8.69

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 50 1.6e-06 short chain dehydrogenase
adh_short_C2 PF13561 54 - 227 5.6e-40 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 54 - 177 2e-29 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 408
AcsI RAATTY 2 cut(s) 451, 612
AcuI CTGAAG 1 cut(s) 356
AflII CTTAAG 1 cut(s) 32
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 4 cut(s) 13, 296, 447, 536
AluBI AGCT 7 cut(s) 163, 199, 245, 392, 431, 575, 647
AluI AGCT 7 cut(s) 163, 199, 245, 392, 431, 575, 647
Alw21I GWGCWC 2 cut(s) 133, 165
Alw26I GTCTC 2 cut(s) 181, 373
ApeKI GCWGC 6 cut(s) 221, 285, 416, 524, 527, 647
ApoI RAATTY 2 cut(s) 451, 612
AsiGI ACCGGT 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 46, 637
AsuII TTCGAA 1 cut(s) 484
AvaII GGWCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 133, 165
BbvI GCAGC 6 cut(s) 208, 297, 428, 536, 539, 634
BccI CCATC 2 cut(s) 185, 315
BcoDI GTCTC 2 cut(s) 181, 373
BfaI CTAG 4 cut(s) 66, 98, 320, 706
BfmI CTRYAG 2 cut(s) 246, 495
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 6 cut(s) 222, 286, 417, 525, 528, 648
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 6 cut(s) 223, 287, 418, 526, 529, 649
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 3 cut(s) 213, 350, 556
BmuI ACTGGG 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 2 cut(s) 56, 538
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 4 cut(s) 204, 325, 435, 547
BseJI GATNNNNATC 1 cut(s) 546
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 255, 361
BseXI GCAGC 6 cut(s) 208, 297, 428, 536, 539, 634
BseYI CCCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 30
BshTI ACCGGT 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 133, 165
BsiSI CCGG 2 cut(s) 57, 539
BslFI GGGAC 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 181, 373
BsmFI GGGAC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 133, 165
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 503
Bst4CI ACNGT 4 cut(s) 118, 175, 496, 694
Bst6I CTCTTC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 200, 236
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 4 cut(s) 204, 325, 435, 547
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 181, 373
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 201, 416, 506
BstNSI RCATGY 1 cut(s) 462
BstSFI CTRYAG 2 cut(s) 246, 495
BstV1I GCAGC 6 cut(s) 208, 297, 428, 536, 539, 634
Bsu15I ATCGAT 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 4 cut(s) 204, 325, 435, 547
BtsIMutI CAGTG 2 cut(s) 123, 516
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 150
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 2 cut(s) 459, 504
CviJI RGCY 9 cut(s) 18, 163, 199, 245, 392, 431, 568, 575, 647
CviKI_1 RGCY 9 cut(s) 18, 163, 199, 245, 392, 431, 568, 575, 647
DdeI CTNAG 2 cut(s) 200, 236
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 397
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 2 cut(s) 462, 507
FaqI GGGAC 1 cut(s) 13
FatI CATG 2 cut(s) 458, 503
Fnu4HI GCNGC 6 cut(s) 222, 286, 417, 525, 528, 648
FokI GGATG 4 cut(s) 191, 312, 422, 554
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 6 cut(s) 222, 286, 417, 525, 528, 648
FspBI CTAG 4 cut(s) 66, 98, 320, 706
GluI GCNGC 6 cut(s) 222, 286, 417, 525, 528, 648
GsaI CCCAGC 1 cut(s) 647
HapII CCGG 2 cut(s) 57, 539
Hin1II CATG 2 cut(s) 462, 507
HincII GTYRAC 2 cut(s) 317, 514
HindII GTYRAC 2 cut(s) 317, 514
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 296
HpaII CCGG 2 cut(s) 57, 539
HphI GGTGA 2 cut(s) 46, 637
Hpy166II GTNNAC 2 cut(s) 317, 514
Hpy188I TCNGA 3 cut(s) 239, 336, 563
Hpy188III TCNNGA 3 cut(s) 345, 439, 551
Hpy8I GTNNAC 2 cut(s) 317, 514
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 2 cut(s) 331, 558
HpyCH4III ACNGT 4 cut(s) 118, 175, 496, 694
HpyCH4V TGCA 5 cut(s) 47, 121, 224, 416, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 416, 506
HpyF3I CTNAG 2 cut(s) 200, 236
Hsp92II CATG 2 cut(s) 462, 507
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 160, 242, 428
Lsp1109I GCAGC 6 cut(s) 208, 297, 428, 536, 539, 634
LweI GCATC 3 cut(s) 213, 350, 556
MaeI CTAG 4 cut(s) 66, 98, 320, 706
MaeIII GTNAC 4 cut(s) 52, 134, 229, 625
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 104, 275, 323, 609
MhlI GDGCHC 2 cut(s) 133, 165
MluCI AATT 3 cut(s) 451, 612, 678
MnlI CCTC 7 cut(s) 62, 150, 233, 339, 382, 650, 677
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 3 cut(s) 126, 463, 552
MspA1I CMGCKG 1 cut(s) 647
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 2 cut(s) 57, 539
MwoI GCNNNNNNNGC 3 cut(s) 201, 416, 506
NcoI CCATGG 1 cut(s) 503
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 462, 507
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 3 cut(s) 52, 229, 625
NspI RCATGY 1 cut(s) 462
NspV TTCGAA 1 cut(s) 484
PfeI GAWTC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 6 cut(s) 223, 287, 418, 526, 529, 649
Psp124BI GAGCTC 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 647
RseI CAYNNNNRTG 3 cut(s) 126, 463, 552
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 6 cut(s) 222, 286, 417, 525, 528, 648
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 27
SduI GDGCHC 2 cut(s) 133, 165
SetI ASST 9 cut(s) 26, 128, 165, 201, 247, 394, 433, 577, 649
SfaNI GCATC 3 cut(s) 213, 350, 556
SfcI CTRYAG 2 cut(s) 246, 495
SfuI TTCGAA 1 cut(s) 484
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 3 cut(s) 126, 463, 552
SmlI CTYRAG 2 cut(s) 32, 271
SmoI CTYRAG 2 cut(s) 32, 271
Sse9I AATT 3 cut(s) 451, 612, 678
SsiI CCGC 1 cut(s) 408
SspMI CTAG 4 cut(s) 66, 98, 320, 706
SstI GAGCTC 1 cut(s) 165
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 4 cut(s) 118, 175, 496, 694
TaqI TCGA 4 cut(s) 90, 150, 484, 577
TasI AATT 3 cut(s) 451, 612, 678
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 123, 523
TseFI GTSAC 3 cut(s) 52, 229, 625
TseI GCWGC 6 cut(s) 221, 285, 416, 524, 527, 647
Tsp45I GTSAC 3 cut(s) 52, 229, 625
TspDTI ATGAA 1 cut(s) 624
TspRI CASTG 2 cut(s) 123, 523
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 451, 612
XceI RCATGY 1 cut(s) 462
XspI CTAG 4 cut(s) 66, 98, 320, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.