Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

8000448 .. 8002619

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGGGAAAGGATTCAACAGTGAAAGATGGTCTCTAAAGGGCAAGACCGCCCTAGTCACTGGTGGAACGAAAGGCATCGGGTACGCAATTGTGGAGGAGCTAGCGGGACTTGGCGCAACTGTACATACCTGTGCTCGTAACGAAGCACTGCTTAATCAGAGGATTCAAGAATGGGAGAGTAAGGGATTTAAAGTGAGTGGTTCAGTTTGTGACTTGACCTCTAAATCCCAAAGGGAGGAGCTATTGGAGACTGTCTCCTCTGTTTTCGATGGAAAGCTTAACATTCTGGTAAATAATGCAGCAACATGCACGCTCAGAACTACTACAGACTATAGTTTGGAAGATTTCTCAAGCATGATGAGTACCAATGTGGAATCTCCTTACCATCTTTGTCAACTTGCACATCCTCTCTTGAAGGCCTCAGGCAATGGAAGCATTGTATTCATCGCCTCCATCGCCGGTATAAAAGCTCTGCCTAGATTATCTGCCTACGCGGCAACGAAAAGCGCCATCATCCAGATTTCGAAGAATTTGGCATGTGAATGGGCACAAGATAGTATTCGAACAAACACTGTAGCACCATGGGCTGTCAACACCGGGGCTAAACCTGATAATGATGATCATTCTGCTGACTATAGACGCTTAATAGGTCGAACTCCTATCCGTCGTGTTGCAGAGCCTAATGAAATTTCATCCTTGGTGACATTCCTTTGCCTTCCTGCTGCATCATACATCACTGGACAAGTTGTTAGTATTGATGGAGGATTTACAGTTAGCGGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

28.05

Weight (kDa)

7.6

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	16 - 205	3.5e-49	short chain dehydrogenase
KR	PF08659	17 - 171	8.7e-13	KR domain
adh_short_C2	PF13561	25 - 258	2.6e-55	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	497
AciI	CCGC	4 cut(s)	51, 107, 497, 780
AcsI	RAATTY	2 cut(s)	532, 690
AfaI	GTAC	3 cut(s)	86, 126, 367
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	19, 170, 418
AluBI	AGCT	4 cut(s)	103, 244, 280, 473
AluI	AGCT	4 cut(s)	103, 244, 280, 473
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	3 cut(s)	39, 245, 262
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	302, 725
ApoI	RAATTY	2 cut(s)	532, 690
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	119, 512
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	715
AsuII	TTCGAA	2 cut(s)	527, 565
AsuNHI	GCTAGC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	314, 712
BccI	CCATC	6 cut(s)	24, 266, 396, 464, 521, 755
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	3 cut(s)	39, 245, 262
BfaI	CTAG	4 cut(s)	56, 104, 480, 787
BfmI	CTRYAG	4 cut(s)	327, 334, 576, 637
BfoI	RGCGCY	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	4 cut(s)	303, 498, 726, 781
BlsI	GCNGC	4 cut(s)	304, 499, 727, 782
Bme1390I	CCNGG	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	87, 737
BmtI	GCTAGC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bpu14I	TTCGAA	2 cut(s)	527, 565
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	584, 600, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	67, 745
Bse21I	CCTNAGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	584, 600, 699
BseGI	GGATG	3 cut(s)	406, 516, 695
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	331, 438
BseNI	ACTGG	2 cut(s)	67, 745
BseRI	GAGGAG	3 cut(s)	113, 250, 254
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	314, 712
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	462, 600
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	39, 245, 262
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	39
Bsp119I	TTCGAA	2 cut(s)	527, 565
Bsp1286I	GDGCHC	2 cut(s)	139, 553
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	622
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	4 cut(s)	51, 107, 497, 780
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	2 cut(s)	330, 437
BspFNI	CGCG	1 cut(s)	497
BspOI	GCTAGC	1 cut(s)	107
BspT104I	TTCGAA	2 cut(s)	527, 565
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	67, 745
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	584, 600, 699
BssMI	GATC	1 cut(s)	622
BssT1I	CCWWGG	2 cut(s)	584, 699
Bst4CI	ACNGT	5 cut(s)	23, 124, 256, 577, 775
BstAUI	TGTACA	1 cut(s)	124
BstBI	TTCGAA	2 cut(s)	527, 565
BstC8I	GCNNGC	2 cut(s)	105, 314
BstDEI	CTNAG	2 cut(s)	317, 424
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	406, 516, 695
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	119, 512
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	3 cut(s)	39, 245, 262
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 458, 497, 587
BstNSI	RCATGY	2 cut(s)	312, 543
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	4 cut(s)	327, 334, 576, 637
BstSLI	GKGCMC	1 cut(s)	553
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	314, 712
Bsu36I	CCTNAGG	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	584
BtgZI	GCGATG	2 cut(s)	433, 442
BtsCI	GGATG	3 cut(s)	406, 516, 695
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	5 cut(s)	28, 60, 149, 573, 738
Cac8I	GCNNGC	2 cut(s)	105, 314
CfoI	GCGC	2 cut(s)	119, 512
Cfr10I	RCCGGY	1 cut(s)	461
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	3 cut(s)	85, 125, 366
CviAII	CATG	4 cut(s)	309, 358, 540, 585
CviQI	GTAC	3 cut(s)	85, 125, 366
DdeI	CTNAG	2 cut(s)	317, 424
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DraI	TTTAAA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	584, 699
Eco147I	AGGCCT	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	584, 699
ErhI	CCWWGG	2 cut(s)	584, 699
FaeI	CATG	4 cut(s)	312, 361, 543, 588
FaiI	YATR	9 cut(s)	129, 310, 336, 359, 467, 541, 586, 639, 733
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	308, 357, 539, 584
FauI	CCCGC	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	303, 498, 726, 781
FokI	GGATG	3 cut(s)	393, 503, 682
Fsp4HI	GCNGC	4 cut(s)	303, 498, 726, 781
FspBI	CTAG	4 cut(s)	56, 104, 480, 787
GlaI	GCGC	2 cut(s)	118, 511
GluI	GCNGC	4 cut(s)	303, 498, 726, 781
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	2 cut(s)	462, 600
HgaI	GACGC	1 cut(s)	651
HhaI	GCGC	2 cut(s)	119, 512
Hin1II	CATG	4 cut(s)	312, 361, 543, 588
Hin6I	GCGC	2 cut(s)	117, 510
HinP1I	GCGC	2 cut(s)	117, 510
HincII	GTYRAC	2 cut(s)	398, 595
HindII	GTYRAC	2 cut(s)	398, 595
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	15, 166, 377
HpaII	CCGG	2 cut(s)	462, 600
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	2 cut(s)	398, 595
Hpy188I	TCNGA	2 cut(s)	162, 320
Hpy188III	TCNNGA	3 cut(s)	170, 415, 520
Hpy8I	GTNNAC	2 cut(s)	398, 595
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	2 cut(s)	412, 728
HpyCH4III	ACNGT	5 cut(s)	23, 124, 256, 577, 775
HpyCH4V	TGCA	5 cut(s)	302, 312, 404, 677, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 458, 497, 587
HpyF3I	CTNAG	2 cut(s)	317, 424
Hsp92II	CATG	4 cut(s)	312, 361, 543, 588
HspAI	GCGC	2 cut(s)	117, 510
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	100, 241
Lsp1109I	GCAGC	2 cut(s)	314, 712
LweI	GCATC	2 cut(s)	87, 737
MaeI	CTAG	4 cut(s)	56, 104, 480, 787
MaeIII	GTNAC	4 cut(s)	58, 140, 212, 703
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	2 cut(s)	356, 541
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	139, 553
MluCI	AATT	3 cut(s)	90, 532, 690
MnlI	CCTC	9 cut(s)	91, 156, 232, 232, 271, 420, 433, 463, 758
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	4 cut(s)	156, 192, 282, 647
MslI	CAYNNNNRTG	2 cut(s)	132, 544
MspI	CCGG	2 cut(s)	462, 600
MspR9I	CCNGG	1 cut(s)	601
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	435, 458, 497, 587
NciI	CCSGG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	1 cut(s)	622
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	312, 361, 543, 588
NmuCI	GTSAC	3 cut(s)	58, 212, 703
NspI	RCATGY	2 cut(s)	312, 543
NspV	TTCGAA	2 cut(s)	527, 565
PceI	AGGCCT	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	15, 166, 377
PkrI	GCNGC	4 cut(s)	304, 499, 727, 782
PspFI	CCCAGC	1 cut(s)	5
RsaI	GTAC	3 cut(s)	86, 126, 367
RsaNI	GTAC	3 cut(s)	85, 125, 366
RseI	CAYNNNNRTG	2 cut(s)	132, 544
SaqAI	TTAA	4 cut(s)	156, 192, 282, 647
SatI	GCNGC	4 cut(s)	303, 498, 726, 781
Sau3AI	GATC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	139, 553
SetI	ASST	8 cut(s)	105, 134, 224, 246, 282, 475, 613, 655
SfaNI	GCATC	2 cut(s)	87, 737
SfcI	CTRYAG	4 cut(s)	327, 334, 576, 637
SfuI	TTCGAA	2 cut(s)	527, 565
SmiMI	CAYNNNNRTG	2 cut(s)	132, 544
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	3 cut(s)	90, 532, 690
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	4 cut(s)	51, 107, 497, 780
SspMI	CTAG	4 cut(s)	56, 104, 480, 787
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	2 cut(s)	584, 699
TaaI	ACNGT	5 cut(s)	23, 124, 256, 577, 775
TaqI	TCGA	4 cut(s)	270, 527, 565, 655
TasI	AATT	3 cut(s)	90, 532, 690
TatI	WGTACW	1 cut(s)	124
TauI	GCSGC	2 cut(s)	500, 783
TfiI	GAWTC	3 cut(s)	15, 166, 377
Tru1I	TTAA	4 cut(s)	156, 192, 282, 647
Tru9I	TTAA	4 cut(s)	156, 192, 282, 647
TscAI	CASTG	5 cut(s)	28, 67, 156, 580, 745
TseFI	GTSAC	3 cut(s)	58, 212, 703
TseI	GCWGC	2 cut(s)	302, 725
Tsp45I	GTSAC	3 cut(s)	58, 212, 703
TspDTI	ATGAA	3 cut(s)	436, 684, 702
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	5 cut(s)	28, 67, 156, 580, 745
XapI	RAATTY	2 cut(s)	532, 690
XceI	RCATGY	2 cut(s)	312, 543
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	4 cut(s)	56, 104, 480, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.