Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

12176965 .. 12178081

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAGGTTTCAACAGCCAAAGATGGTCTCTGAAGGGTATGACCGCACTCGTCACTGGTGGAACTAAAGGCATTGGAACTAACCATATCAATTTTTCGGTATGCTTTAGATATGCCATCGTGGAAGAGCTGGCCGGACTAGGGGCTACAGTGCATACCTGCGCTCGTAATCAAGAACAGATTGACGAGAGGGTTCGAGAATGGAAGAGCAAGGGTTTTAAAGTGAGTGGCTCAGTGAGTGACCTCACATCTAAATCTCAAAGAGAGGAGCTCATGAGAACTGTTTCCTCTAATTTTGACGGCGAACTTAACATCCTTGTAAATAATGCAGCAACAGTCACTCTAAGAAATACTACAGAATATGATCTGGAAGATTTGTCAAGTATGATGAGCACAAATGTTGAATCCCCCTACCATCTTTGTCAACTTGCATATCCCCTCCTCAAGGCCTCCGGAAATGGAAGTATTGTATTCGTCGCCTCCATTGCTGGTTTAAAAGCTCTACCTAGACTATCTGCCTATGCAGCAACGAAAAGTGCCGTCATCCAGATTTCAAAGAACTTGGCGTGTGAATGGGCTAAAGACGGCATTCGAACAAACGCTGTAGCACCTTGGGCTGTTAACACCGGAGTTGAAGTTGAAAACGATGACCACTCTGACGACTTCAGACGGCTTATAAGTCGAACTCCTATCCGTCGCGTGGCGGAACCTAATGAAATCTCATCACTGGTCACTTTTCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTGTTAGTGTTGATGGAGGATTTACCGTCAGCGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

271

Amino Acids

29.38

Weight (kDa)

6.44

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 216	6.1e-44	short chain dehydrogenase
KR	PF08659	15 - 181	2.6e-08	KR domain
adh_short_C2	PF13561	38 - 267	9.2e-51	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	167
AccII	CGCG	1 cut(s)	699
AccIII	TCCGGA	1 cut(s)	452
AciI	CCGC	3 cut(s)	45, 704, 807
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	2 cut(s)	53, 649
AfiI	CCNNNNNNNGG	3 cut(s)	141, 445, 700
AgsI	TTSAA	5 cut(s)	13, 404, 555, 635, 641
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	130, 271, 500
AluI	AGCT	3 cut(s)	130, 271, 500
Alw21I	GWGCWC	2 cut(s)	273, 395
Alw26I	GTCTC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	452
AoxI	GGCC	2 cut(s)	132, 447
ApeKI	GCWGC	3 cut(s)	329, 524, 752
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	273, 395
BbvI	GCAGC	3 cut(s)	341, 536, 739
BccI	CCATC	4 cut(s)	18, 125, 423, 782
BceAI	ACGGC	4 cut(s)	316, 524, 601, 686
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	140, 507
BfmI	CTRYAG	3 cut(s)	147, 354, 603
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	330, 525, 753
BlsI	GCNGC	3 cut(s)	331, 526, 754
BmiI	GGNNCC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
Bpu14I	TTCGAA	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	611
BsaWI	WCCGGW	2 cut(s)	452, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 445, 700
Bse1I	ACTGG	2 cut(s)	61, 732
Bse3DI	GCAATG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	312, 543
BseLI	CCNNNNNNNGG	3 cut(s)	141, 445, 700
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	61, 732
BseRI	GAGGAG	2 cut(s)	281, 431
BseXI	GCAGC	3 cut(s)	341, 536, 739
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	134, 449
BsiHKAI	GWGCWC	2 cut(s)	273, 395
BsiSI	CCGG	3 cut(s)	135, 453, 627
BslI	CCNNNNNNNGG	3 cut(s)	141, 445, 700
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	134, 449
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	273, 395
Bsp13I	TCCGGA	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	45, 704, 807
BspANI	GGCC	2 cut(s)	134, 449
BspCNI	CTCAG	1 cut(s)	245
BspEI	TCCGGA	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	167
BspQI	GCTCTTC	2 cut(s)	120, 200
BspT104I	TTCGAA	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	61, 732
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	151, 283, 337, 802
Bst6I	CTCTTC	2 cut(s)	120, 200
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	232, 344
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	312, 543
BstFNI	CGCG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 524, 614
BstSFI	CTRYAG	3 cut(s)	147, 354, 603
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	341, 536, 739
BsuRI	GGCC	2 cut(s)	134, 449
BtsCI	GGATG	2 cut(s)	312, 543
BtsIMutI	CAGTG	4 cut(s)	54, 156, 240, 725
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	164
CviAII	CATG	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	232, 344
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	2 cut(s)	220, 495
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	120, 200
EarI	CTCTTC	2 cut(s)	120, 200
EciI	GGCGGA	1 cut(s)	719
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	611
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	53, 649
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	1 cut(s)	277
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	330, 525, 753
FokI	GGATG	2 cut(s)	299, 530
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	330, 525, 753
FspBI	CTAG	2 cut(s)	140, 507
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	330, 525, 753
HaeIII	GGCC	2 cut(s)	134, 449
HapII	CCGG	3 cut(s)	135, 453, 627
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	2 cut(s)	425, 622
HindII	GTYRAC	2 cut(s)	425, 622
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	3 cut(s)	135, 453, 627
Hpy166II	GTNNAC	2 cut(s)	425, 622
Hpy188I	TCNGA	3 cut(s)	33, 658, 668
Hpy188III	TCNNGA	6 cut(s)	173, 197, 274, 368, 453, 547
Hpy8I	GTNNAC	2 cut(s)	425, 622
Hpy99I	CGWCG	2 cut(s)	479, 699
HpyAV	CCTTC	2 cut(s)	28, 755
HpyCH4III	ACNGT	4 cut(s)	151, 283, 337, 802
HpyCH4V	TGCA	4 cut(s)	154, 329, 431, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 524, 614
HpyF3I	CTNAG	2 cut(s)	232, 344
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	452
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	2 cut(s)	120, 200
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	3 cut(s)	341, 536, 739
MaeI	CTAG	2 cut(s)	140, 507
MaeIII	GTNAC	4 cut(s)	52, 239, 337, 730
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	137, 217, 383
MhlI	GDGCHC	2 cut(s)	273, 395
MluCI	AATT	2 cut(s)	91, 292
MnlI	CCTC	9 cut(s)	183, 254, 259, 298, 449, 452, 460, 490, 785
MroI	TCCGGA	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	4 cut(s)	219, 309, 494, 621
MspA1I	CMGCKG	1 cut(s)	807
MspI	CCGG	3 cut(s)	135, 453, 627
Mva1269I	GAATGC	1 cut(s)	588
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	485, 524, 614
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	4 cut(s)	52, 239, 337, 730
NspV	TTCGAA	1 cut(s)	592
PagI	TCATGA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	449
PciSI	GCTCTTC	2 cut(s)	120, 200
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	331, 526, 754
PsiI	TTATAA	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	2 cut(s)	120, 200
SaqAI	TTAA	4 cut(s)	219, 309, 494, 621
SatI	GCNGC	3 cut(s)	330, 525, 753
Sau3AI	GATC	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	273, 395
SetI	ASST	9 cut(s)	10, 132, 161, 246, 273, 502, 508, 613, 712
SfcI	CTRYAG	3 cut(s)	147, 354, 603
SfuI	TTCGAA	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	91, 292
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	45, 704, 807
SspMI	CTAG	2 cut(s)	140, 507
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	449
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	4 cut(s)	151, 283, 337, 802
TaqI	TCGA	3 cut(s)	196, 592, 682
TasI	AATT	2 cut(s)	91, 292
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	4 cut(s)	219, 309, 494, 621
Tru9I	TTAA	4 cut(s)	219, 309, 494, 621
TscAI	CASTG	4 cut(s)	61, 156, 240, 732
TseFI	GTSAC	4 cut(s)	52, 239, 337, 730
TseI	GCWGC	3 cut(s)	329, 524, 752
Tsp45I	GTSAC	4 cut(s)	52, 239, 337, 730
TspDTI	ATGAA	1 cut(s)	729
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	4 cut(s)	61, 156, 240, 732
XagI	CCTNNNNNAGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	2 cut(s)	140, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.