Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

7977833 .. 7979413

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTTTCAACAGCCAAAGATGGTCTCTGAAGGGAATGACTGCCCTCGTCACTGGTGGAACTAAAGGCATTGGATATGCCATCGTGGAAGAGCTAGCCGGACTAGGGGCGACAGTGCATACCTGTGCTCGTAATCAAGAACAGATCGACGAGTGGGTTCGAGAATGGAAGAGCAAGGGTTTTCAAGTGAGTGGCTCGGTGTGTGACCTCACATCCAAATCTCAAAGAGAGGAGCTCATGAGAACTGTTTCCTCTAAGTTTGACGGCAAACTTAACATCCTCGTAAATAATGCAGCAACAGTCACGCTAAGAAGTACTACAGAATATGCTCTGGAAGATTTGTCAAGTATGATGAGCACAAATGTTGAATCCCCCTATCATCTTTGTCAACTTGCATACCCTCTCCTCAAGGCCTCCGGCAATGGAAGCATCGTCTTCATCGCCTCCATTGCTGGTTTAAAAGCTCTACCTAGACTTTCTGCCTATGCAGCAACGAAAAGTGCCGTCATCCAGATTTCAAAGAACTTGGCGTGTGAATGGGCTAAAGACGGCATTCGAACAAACACTGTAGCACCTTGGGCAGTTAACACCGGAGTTAAAGTCGAAAACGATGACCACTCTGACGACTTCAGACGTCTAATAGGTCGAACTCCCATCCGTCGTGTGGCAGAACCTAATGAAATCTCATCGCTGGTCACTTTTCTCTGCCTTCCCGCTGCTTCTTACATCAACGGACAAGTTGTTAGTGTGGATGGAGGATTTACCGTCAGCGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

28.06

Weight (kDa)

8.24

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	13 - 200	1.4e-07	SDR-like rossmann domain
adh_short	PF00106	15 - 205	2.9e-51	short chain dehydrogenase
KR	PF08659	15 - 169	2.8e-13	KR domain
adh_short_C2	PF13561	23 - 256	2.5e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	640
AciI	CCGC	2 cut(s)	717, 774
AcuI	CTGAAG	2 cut(s)	53, 616
AcyI	GRCGYC	1 cut(s)	637
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	108, 667
AgsI	TTSAA	4 cut(s)	13, 188, 371, 522
AluBI	AGCT	3 cut(s)	97, 238, 467
AluI	AGCT	3 cut(s)	97, 238, 467
Alw21I	GWGCWC	3 cut(s)	133, 240, 362
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
Asp700I	GAANNNNTTC	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	3 cut(s)	133, 240, 362
BbvI	GCAGC	3 cut(s)	308, 503, 706
BccI	CCATC	4 cut(s)	18, 92, 665, 749
BceAI	ACGGC	3 cut(s)	283, 491, 568
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	98, 107, 474
BfmI	CTRYAG	2 cut(s)	321, 570
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmcAI	AGTACT	1 cut(s)	319
BmsI	GCATC	1 cut(s)	441
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu14I	TTCGAA	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 667
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	430, 450
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	5 cut(s)	215, 279, 510, 657, 760
BseLI	CCNNNNNNNGG	2 cut(s)	108, 667
BseMI	GCAATG	2 cut(s)	430, 450
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	248, 398
BseXI	GCAGC	3 cut(s)	308, 503, 706
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	3 cut(s)	133, 240, 362
BsiSI	CCGG	3 cut(s)	102, 420, 594
BslI	CCNNNNNNNGG	2 cut(s)	108, 667
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	133, 240, 362
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	717, 774
BspANI	GGCC	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	2 cut(s)	87, 167
BspT104I	TTCGAA	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	430, 450
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	1 cut(s)	147
BssNI	GRCGYC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	5 cut(s)	118, 250, 304, 571, 769
Bst6I	CTCTTC	2 cut(s)	87, 167
BstACI	GRCGYC	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	258, 311
BstF5I	GGATG	5 cut(s)	215, 279, 510, 657, 760
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	429, 452, 491, 581
BstSFI	CTRYAG	2 cut(s)	321, 570
BstV1I	GCAGC	3 cut(s)	308, 503, 706
BstV2I	GAAGAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	416
BtgZI	GCGATG	2 cut(s)	427, 675
BtsCI	GGATG	5 cut(s)	215, 279, 510, 657, 760
BtsIMutI	CAGTG	3 cut(s)	54, 123, 567
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	8 cut(s)	18, 97, 101, 198, 238, 416, 467, 545
CviKI_1	RGCY	8 cut(s)	18, 97, 101, 198, 238, 416, 467, 545
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	2 cut(s)	258, 311
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	87, 167
EarI	CTCTTC	2 cut(s)	87, 167
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	578
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	53, 616
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	244
FaiI	YATR	7 cut(s)	81, 123, 242, 330, 353, 400, 489
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	5 cut(s)	202, 266, 497, 644, 767
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	3 cut(s)	98, 107, 474
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	102, 420, 594
Hin1I	GRCGYC	1 cut(s)	637
Hin1II	CATG	1 cut(s)	244
HincII	GTYRAC	2 cut(s)	392, 589
HindII	GTYRAC	2 cut(s)	392, 589
HinfI	GANTC	1 cut(s)	371
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	102, 420, 594
Hpy166II	GTNNAC	2 cut(s)	392, 589
Hpy188I	TCNGA	3 cut(s)	33, 625, 635
Hpy188III	TCNNGA	5 cut(s)	140, 164, 241, 335, 514
Hpy8I	GTNNAC	2 cut(s)	392, 589
Hpy99I	CGWCG	2 cut(s)	155, 666
HpyAV	CCTTC	2 cut(s)	28, 722
HpyCH4III	ACNGT	5 cut(s)	118, 250, 304, 571, 769
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	4 cut(s)	121, 296, 398, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	429, 452, 491, 581
HpyF3I	CTNAG	2 cut(s)	258, 311
HpySE526I	ACGT	1 cut(s)	637
Hsp92I	GRCGYC	1 cut(s)	637
Hsp92II	CATG	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	2 cut(s)	87, 167
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	9 cut(s)	42, 115, 139, 320, 433, 441, 527, 607, 680
Lsp1109I	GCAGC	3 cut(s)	308, 503, 706
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	3 cut(s)	98, 107, 474
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	4 cut(s)	52, 206, 304, 697
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	104, 184, 350, 430
MhlI	GDGCHC	3 cut(s)	133, 240, 362
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	4 cut(s)	276, 461, 588, 600
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	2 cut(s)	719, 774
MspI	CCGG	3 cut(s)	102, 420, 594
Mva1269I	GAATGC	1 cut(s)	555
MwoI	GCNNNNNNNGC	4 cut(s)	429, 452, 491, 581
NdeII	GATC	1 cut(s)	147
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	4 cut(s)	52, 206, 304, 697
NspV	TTCGAA	1 cut(s)	559
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	87, 167
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	298, 493, 721
Psp124BI	GAGCTC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	87, 167
SaqAI	TTAA	4 cut(s)	276, 461, 588, 600
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	1 cut(s)	147
ScaI	AGTACT	1 cut(s)	319
SduI	GDGCHC	3 cut(s)	133, 240, 362
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	2 cut(s)	321, 570
SfuI	TTCGAA	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	717, 774
SspMI	CTAG	3 cut(s)	98, 107, 474
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	5 cut(s)	118, 250, 304, 571, 769
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	5 cut(s)	150, 163, 559, 606, 649
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	276, 461, 588, 600
Tru9I	TTAA	4 cut(s)	276, 461, 588, 600
TscAI	CASTG	3 cut(s)	61, 123, 574
TseFI	GTSAC	4 cut(s)	52, 206, 304, 697
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	4 cut(s)	52, 206, 304, 697
TspDTI	ATGAA	2 cut(s)	430, 696
TspGWI	ACGGA	2 cut(s)	650, 750
TspRI	CASTG	3 cut(s)	61, 123, 574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	3 cut(s)	98, 107, 474
ZraI	GACGTC	1 cut(s)	638
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.