Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

22861261 .. 22862479

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1148500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTTTCGACAGCCAAAGATGGTCTCTAAAGGGTATGACTGCCCTCGTCACCGGTGGAACTAAAGGCATCGGGTATGCCATAGTGGAAGAGCTAGCAGGACTTGGAGCAACCGTGCATACCTGTGCCCGTAACGAAGCGCAGATTCTTGAGAGGCTTCAAGAATGGGAAAGTAAGGGATTCAAAGTGACTGGCTCGGTTTGTGACTTGACCTCTAAAGCACAAAGAGAGAACCTCATAAAAACTGTCTCCTCTATTTTTCATGGCAAACTGAACATCCTCGTAAATAGTGCTGCAACTTGCACACTGAGAGGAACTACAGATTACACTTTGGAAGATTTCTCAAGTATGATGGAAACCAATGTTGAATCTCCCTACCACCTTTCTCAACTTGCACACCCTCTCTTGAAAGCCTCTGGAAATGCAAGCATTGTCTTTGTGGCATCTATTGCCGGTGTGGTAGCTCTTCCAAAACTCTCTGCCTATGCAGCAACAAAAAGTGCGATTATCCAAATTTCAAAGAACTTGGCATGCGAATGGGCAAAGGACGGCATTCGTACTAATTCTGTGGCACCATGGGCTGTCAATACCGGAGTTAAAGTTGAATCTGACGGCCATTCTGATGATTTCAGACGCCTGATAGGTAGAACCCCCATCCGTCGCCTGGCACAGCCTAATGAAATCTCATCTCTAGTCACTTTCCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTATTAGCGTTGACGGTGGATTTACCGTTAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.77

Weight (kDa)

8.25

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	13 - 215	1.8e-06	SDR-like rossmann domain
adh_short	PF00106	15 - 203	9.7e-47	short chain dehydrogenase
KR	PF08659	15 - 191	2.4e-14	KR domain
adh_short_C2	PF13561	23 - 256	2e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	1 cut(s)	774
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	637
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	164, 187, 371, 412, 522, 608
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	2 cut(s)	97, 467
AluI	AGCT	2 cut(s)	97, 467
Alw26I	GTCTC	2 cut(s)	33, 256
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	46
AsuNHI	GCTAGC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	3 cut(s)	18, 349, 665
BceAI	ACGGC	2 cut(s)	568, 631
BciT130I	CCWGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	33, 256
BfaI	CTAG	3 cut(s)	98, 695, 781
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
Bme1390I	CCNGG	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	2 cut(s)	81, 455
BmtI	GCTAGC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpuEI	CTTGAG	2 cut(s)	173, 331
BsaHI	GRCGYC	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	2 cut(s)	56, 593
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse118I	RCCGGY	2 cut(s)	56, 455
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	279, 657
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	283, 503, 706
BshFI	GGCC	1 cut(s)	618
BshNI	GGYRCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	57, 456, 594
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	2 cut(s)	33, 256
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	618
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	576
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	2 cut(s)	87, 474
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	2 cut(s)	56, 455
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	2 cut(s)	56, 455
BssECI	CCNNGG	1 cut(s)	578
BssNI	GRCGYC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	118, 250, 758, 769
Bst6I	CTCTTC	2 cut(s)	87, 474
BstACI	GRCGYC	1 cut(s)	637
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	99, 430, 535
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	279, 657
BstHHI	GCGC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	33, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	283, 503, 706
BsuRI	GGCC	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	279, 657
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	99, 430, 535
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	56, 455
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	561
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	3 cut(s)	266, 534, 579
CviJI	RGCY	9 cut(s)	18, 97, 160, 198, 416, 467, 584, 618, 676
CviKI_1	RGCY	9 cut(s)	18, 97, 160, 198, 416, 467, 584, 618, 676
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	87, 474
EarI	CTCTTC	2 cut(s)	87, 474
Eco130I	CCWWGG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	269, 537, 582
FatI	CATG	3 cut(s)	265, 533, 578
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 644
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	3 cut(s)	98, 695, 781
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeIII	GGCC	1 cut(s)	618
HapII	CCGG	3 cut(s)	57, 456, 594
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	269, 537, 582
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	4 cut(s)	148, 183, 371, 608
HpaII	CCGG	3 cut(s)	57, 456, 594
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	3 cut(s)	613, 625, 635
Hpy188III	TCNNGA	4 cut(s)	152, 164, 409, 420
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	4 cut(s)	118, 250, 758, 769
HpyCH4V	TGCA	6 cut(s)	121, 299, 306, 398, 428, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
HpyF3I	CTNAG	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	637
Hsp92II	CATG	3 cut(s)	269, 537, 582
HspAI	GCGC	1 cut(s)	143
LguI	GCTCTTC	2 cut(s)	87, 474
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
LweI	GCATC	2 cut(s)	81, 455
MaeI	CTAG	3 cut(s)	98, 695, 781
MaeIII	GTNAC	5 cut(s)	52, 134, 190, 206, 697
MboII	GAAGA	3 cut(s)	104, 350, 461
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	516, 565
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	3 cut(s)	126, 538, 624
MspI	CCGG	3 cut(s)	57, 456, 594
MspR9I	CCNGG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
NcoI	CCATGG	1 cut(s)	578
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	269, 537, 582
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	4 cut(s)	52, 190, 206, 697
NspI	RCATGY	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	537
PciSI	GCTCTTC	2 cut(s)	87, 474
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	4 cut(s)	148, 183, 371, 608
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	298, 493, 721
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	576
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	3 cut(s)	126, 538, 624
SapI	GCTCTTC	2 cut(s)	87, 474
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	3 cut(s)	297, 492, 720
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	8 cut(s)	10, 99, 128, 218, 240, 387, 469, 649
SfaNI	GCATC	2 cut(s)	81, 455
SfcI	CTRYAG	1 cut(s)	321
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	3 cut(s)	126, 538, 624
SmlI	CTYRAG	2 cut(s)	152, 346
SmoI	CTYRAG	2 cut(s)	152, 346
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	2 cut(s)	516, 565
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	3 cut(s)	98, 695, 781
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	118, 250, 758, 769
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	516, 565
TfiI	GAWTC	4 cut(s)	148, 183, 371, 608
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	4 cut(s)	52, 190, 206, 697
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	4 cut(s)	52, 190, 206, 697
TspDTI	ATGAA	2 cut(s)	254, 696
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XspI	CTAG	3 cut(s)	98, 695, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.