Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

26234878 .. 26236533

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTGGGTTCAAAAGCCAAAGATATGCCATTGTCGAAGAACTAACAGGACTTGGGGCAACAGTGCATACCTGTGCTCGTAACAAGGAAATGATCGATGAGAGGGTTCGAGAGTGGAAGATTAAGGGATTTACCGTGAGTGGTTCAGTTTGTGACCTCACATCTAAATCTCAAAGGGAGGAGCTCATAAAGACTGTCTCATCTGTTTTTGATGGCAAGCTTAGCATCCTTCTTACTGTAGAATTTAGTTCTCAAGGTTCTTTTATGGTGATACAGATAAATAATGCTGCAATAGTCACACTCAGAAGAGCTACAGATTATAGTTTAGAAGATTTCTCAAGTATGATGAGCAGCAATGTTGAATCTCCCTACCATCTTTGTCAACTAGCACATCCTCTTCTGAAGGCATCAGGAAATGGAAGCATTATATTTGTCTCCTCTATTGCTGGTATAATAGCTCTGCCTAAACTCTCTGCCTATGCAGCAACCAAAGGAGCTATCATCCAGATTTCAAAGAATTTGGCATGTGAATGGGCAAAAGACAACATTCGGACAAATACTGTAGCACCATGGGCTGTCAACACTGGGGCAGCAGCAGTTGAACCGGATGAGCATCGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTTGTCGCCTTGCAGACCCTAATGAAATTTCATCTCTGGTGACTTTTCTTTGCCTCCCAGCTGCTTCTTACATCAATGGACAAGTTGTTAGCATTGATGGAGGATTTACAGTTAGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

258

Amino Acids

27.99

Weight (kDa)

6.89

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	9 - 254	1.1e-43	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	10 - 199	5.5e-34	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	242, 517, 678
AcuI	CTGAAG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	13, 362, 513, 602
AluBI	AGCT	7 cut(s)	184, 220, 311, 458, 497, 641, 713
AluI	AGCT	7 cut(s)	184, 220, 311, 458, 497, 641, 713
Alw21I	GWGCWC	2 cut(s)	79, 186
Alw26I	GTCTC	2 cut(s)	202, 439
ApeKI	GCWGC	6 cut(s)	287, 351, 482, 590, 593, 713
ApoI	RAATTY	3 cut(s)	242, 517, 678
AsuHPI	GGTGA	2 cut(s)	280, 703
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	79, 186
BbvI	GCAGC	6 cut(s)	274, 363, 494, 602, 605, 700
BccI	CCATC	3 cut(s)	206, 381, 743
BcoDI	GTCTC	2 cut(s)	202, 439
BfaI	CTAG	2 cut(s)	386, 775
BfmI	CTRYAG	3 cut(s)	237, 312, 561
BisI	GCNGC	6 cut(s)	288, 352, 483, 591, 594, 714
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	6 cut(s)	289, 353, 484, 592, 595, 715
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	3 cut(s)	234, 416, 622
BmuI	ACTGGG	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	237, 322
Bsa29I	ATCGAT	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	604
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	4 cut(s)	225, 391, 501, 613
BseJI	GATNNNNATC	1 cut(s)	612
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	2 cut(s)	194, 427
BseXI	GCAGC	6 cut(s)	274, 363, 494, 602, 605, 700
BseYI	CCCAGC	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	79, 186
BsiSI	CCGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	202, 439
Bsp1286I	GDGCHC	2 cut(s)	79, 186
Bsp143I	GATC	1 cut(s)	93
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	569
Bst4CI	ACNGT	6 cut(s)	64, 136, 196, 238, 562, 763
Bst6I	CTCTTC	2 cut(s)	301, 402
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	221, 302
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	4 cut(s)	225, 391, 501, 613
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	2 cut(s)	202, 439
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 482, 572
BstNSI	RCATGY	1 cut(s)	528
BstSFI	CTRYAG	3 cut(s)	237, 312, 561
BstV1I	GCAGC	6 cut(s)	274, 363, 494, 602, 605, 700
Bsu15I	ATCGAT	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	4 cut(s)	225, 391, 501, 613
BtsIMutI	CAGTG	2 cut(s)	69, 582
Cac8I	GCNNGC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	96
CviAII	CATG	2 cut(s)	525, 570
DdeI	CTNAG	2 cut(s)	221, 302
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	301, 402
EarI	CTCTTC	2 cut(s)	301, 402
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	2 cut(s)	528, 573
FatI	CATG	2 cut(s)	524, 569
Fnu4HI	GCNGC	6 cut(s)	288, 352, 483, 591, 594, 714
FokI	GGATG	4 cut(s)	212, 378, 488, 620
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	6 cut(s)	288, 352, 483, 591, 594, 714
FspBI	CTAG	2 cut(s)	386, 775
GluI	GCNGC	6 cut(s)	288, 352, 483, 591, 594, 714
GsaI	CCCAGC	1 cut(s)	713
HapII	CCGG	1 cut(s)	605
Hin1II	CATG	2 cut(s)	528, 573
HincII	GTYRAC	2 cut(s)	383, 580
HindII	GTYRAC	2 cut(s)	383, 580
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	280, 703
Hpy166II	GTNNAC	2 cut(s)	383, 580
Hpy188I	TCNGA	4 cut(s)	305, 402, 552, 629
Hpy188III	TCNNGA	4 cut(s)	110, 411, 505, 617
Hpy8I	GTNNAC	2 cut(s)	383, 580
HpyAV	CCTTC	3 cut(s)	239, 397, 624
HpyCH4III	ACNGT	6 cut(s)	64, 136, 196, 238, 562, 763
HpyCH4V	TGCA	4 cut(s)	67, 290, 482, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 482, 572
HpyF3I	CTNAG	2 cut(s)	221, 302
Hsp92II	CATG	2 cut(s)	528, 573
Kzo9I	GATC	1 cut(s)	93
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	181, 494
LpnPI	CCDG	9 cut(s)	33, 85, 396, 432, 518, 570, 618, 674, 723
Lsp1109I	GCAGC	6 cut(s)	274, 363, 494, 602, 605, 700
LweI	GCATC	3 cut(s)	234, 416, 622
MaeI	CTAG	2 cut(s)	386, 775
MaeIII	GTNAC	4 cut(s)	80, 152, 295, 691
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	5 cut(s)	50, 130, 318, 341, 389
MhlI	GDGCHC	2 cut(s)	79, 186
MluCI	AATT	3 cut(s)	242, 517, 678
MnlI	CCTC	7 cut(s)	96, 167, 172, 405, 448, 716, 746
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	3 cut(s)	72, 529, 618
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	222, 482, 572
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	528, 573
NmuCI	GTSAC	3 cut(s)	152, 295, 691
NspI	RCATGY	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	289, 353, 484, 592, 595, 715
Psp124BI	GAGCTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	3 cut(s)	72, 529, 618
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	6 cut(s)	288, 352, 483, 591, 594, 714
Sau3AI	GATC	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	79, 186
SfaNI	GCATC	3 cut(s)	234, 416, 622
SfcI	CTRYAG	3 cut(s)	237, 312, 561
SmiMI	CAYNNNNRTG	3 cut(s)	72, 529, 618
SmlI	CTYRAG	2 cut(s)	252, 337
SmoI	CTYRAG	2 cut(s)	252, 337
Sse9I	AATT	3 cut(s)	242, 517, 678
SspMI	CTAG	2 cut(s)	386, 775
SstI	GAGCTC	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	6 cut(s)	64, 136, 196, 238, 562, 763
TaqI	TCGA	4 cut(s)	36, 96, 109, 643
TasI	AATT	3 cut(s)	242, 517, 678
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	69, 589
TseFI	GTSAC	3 cut(s)	152, 295, 691
TseI	GCWGC	6 cut(s)	287, 351, 482, 590, 593, 713
Tsp45I	GTSAC	3 cut(s)	152, 295, 691
TspDTI	ATGAA	2 cut(s)	672, 690
TspRI	CASTG	2 cut(s)	69, 589
XapI	RAATTY	3 cut(s)	242, 517, 678
XceI	RCATGY	1 cut(s)	528
XspI	CTAG	2 cut(s)	386, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.