Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Forward (+)

22236955 .. 22238840

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1135300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGGTTTCAACAGCCAAAGATGGTCTCTAAAGGGTATGACCGCCCTCGTCACTGGTGGAACTAAAGGCATCGGATATGCCATAGTAGAAGAGCTAGCAGGACTTGGTGCAACCGTGCATACTTGTGCTCGTAACGAAGCACAGATTGTTGAGAGGCTTCAAGAATGGGAAGATAAGGGATTCAAAGTGACAGGCTCAGTTTGTGATCTCACCTGTAAAGCTCAAAGAGAAAACCTCATCAAAACCGTCTCCTGTATTTTCAATGGCAAGCTTAACATCCTTGTAAATAATGCTGCAATATGTACTCTCAGAAGTACTGCAGATTACACTTTGGAAGATTTTTCAGGCATGATGGGCACCAATGTTGAATCTCCCTACCATCTTTCCCAACTTGCATATCCTCTCTTGAAAGCCTCAGAAGATGCAAGTATTGTATTTGTCTCCTCTATTGCTGGTCTGAAAGCTCTACCCAGACTATCAGCCTATGCAGCAACCAAAGGAGCAGTGATACAGATTGCAAAAAATTTGGCATGTGAATGGGCAAAAGACAACATTCGTACAAACACTGTGGCACCATGGGCTGTCAACACTGGGGCTAAAGTCGAAAATGATGATCATGCTGAAGATTTCAGACGGCTGATAGGTCGAACTCCCATCCGTCGTCTTGCACAGCCTAATGAAATTTCATCTCTGGTGTCCTTCCTTTGCCTCCCTGCTGCTTCTTTCATCAATGGACAAGTGATTAGCGTTGATGGAGGATTCACTGTTAGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.95

Weight (kDa)

7.56

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	13 - 199	1e-06	SDR-like rossmann domain
adh_short	PF00106	15 - 205	6.7e-48	short chain dehydrogenase
KR	PF08659	15 - 168	3.7e-13	KR domain
adh_short_C2	PF13561	23 - 256	7.2e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	359, 574
AciI	CCGC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	526, 684
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	3 cut(s)	307, 319, 562
AgsI	TTSAA	6 cut(s)	13, 164, 187, 265, 371, 412
AluBI	AGCT	4 cut(s)	97, 224, 274, 467
AluI	AGCT	4 cut(s)	97, 224, 274, 467
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	33, 256, 448
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	2 cut(s)	526, 684
AsuHPI	GGTGA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	362
BanI	GGYRCC	2 cut(s)	359, 574
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	5 cut(s)	18, 349, 390, 665, 749
BceAI	ACGGC	1 cut(s)	653
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	33, 256, 448
BfaI	CTAG	2 cut(s)	98, 781
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmcAI	AGTACT	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	361, 576
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	2 cut(s)	81, 415
BmtI	GCTAGC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	61, 598
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	279, 657
BseMII	CTCAG	3 cut(s)	213, 325, 432
BseNI	ACTGG	2 cut(s)	61, 598
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	283, 503, 706
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	359, 574
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	3 cut(s)	33, 256, 448
BsmBI	CGTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	133, 362
Bsp143I	GATC	2 cut(s)	208, 616
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	212, 324, 431
BspLI	GGNNCC	2 cut(s)	361, 576
BspMAI	CTGCAG	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	2 cut(s)	359, 574
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	61, 598
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	208, 616
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	118, 250, 571, 769
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	99, 272
BstDEI	CTNAG	3 cut(s)	199, 311, 418
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	279, 657
BstKTI	GATC	2 cut(s)	211, 619
BstMAI	GTCTC	3 cut(s)	33, 256, 448
BstMBI	GATC	2 cut(s)	208, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
BstNSI	RCATGY	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	283, 503, 706
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	279, 657
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	5 cut(s)	54, 513, 567, 591, 765
Cac8I	GCNNGC	2 cut(s)	99, 272
Cfr10I	RCCGGY	1 cut(s)	5
Csp6I	GTAC	3 cut(s)	306, 318, 561
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	4 cut(s)	352, 534, 579, 620
CviQI	GTAC	3 cut(s)	306, 318, 561
DdeI	CTNAG	3 cut(s)	199, 311, 418
DpnI	GATC	2 cut(s)	210, 618
DpnII	GATC	2 cut(s)	208, 616
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	355, 537, 582, 623
FatI	CATG	4 cut(s)	351, 533, 578, 619
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 644
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	2 cut(s)	98, 781
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	4 cut(s)	355, 537, 582, 623
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	183, 371, 762
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	5 cut(s)	77, 314, 421, 462, 635
Hpy188III	TCNNGA	2 cut(s)	164, 409
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	4 cut(s)	118, 250, 571, 769
HpyCH4V	TGCA	9 cut(s)	113, 121, 299, 323, 398, 428, 491, 521, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
HpyF3I	CTNAG	3 cut(s)	199, 311, 418
Hsp92II	CATG	4 cut(s)	355, 537, 582, 623
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	208, 616
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
LweI	GCATC	2 cut(s)	81, 415
MaeI	CTAG	2 cut(s)	98, 781
MaeIII	GTNAC	3 cut(s)	52, 134, 190
MalI	GATC	2 cut(s)	210, 618
MboI	GATC	2 cut(s)	208, 616
MboII	GAAGA	5 cut(s)	104, 185, 350, 434, 638
MhlI	GDGCHC	2 cut(s)	133, 362
MluCI	AATT	2 cut(s)	526, 684
MnlI	CCTC	8 cut(s)	59, 150, 248, 414, 427, 457, 722, 752
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	126, 538
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	357, 491, 581
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	208, 616
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	355, 537, 582, 623
NlaIV	GGNNCC	2 cut(s)	361, 576
NmuCI	GTSAC	2 cut(s)	52, 190
NspI	RCATGY	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	183, 371, 762
PkrI	GCNGC	3 cut(s)	298, 493, 721
PspN4I	GGNNCC	2 cut(s)	361, 576
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	307, 319, 562
RsaNI	GTAC	3 cut(s)	306, 318, 561
RseI	CAYNNNNRTG	2 cut(s)	126, 538
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	2 cut(s)	208, 616
ScaI	AGTACT	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	133, 362
SetI	ASST	7 cut(s)	99, 218, 226, 240, 276, 469, 649
SfaNI	GCATC	2 cut(s)	81, 415
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	126, 538
Sse9I	AATT	2 cut(s)	526, 684
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	98, 781
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	118, 250, 571, 769
TaqI	TCGA	2 cut(s)	606, 649
TasI	AATT	2 cut(s)	526, 684
TatI	WGTACW	2 cut(s)	305, 317
TfiI	GAWTC	3 cut(s)	183, 371, 762
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	5 cut(s)	61, 513, 574, 598, 772
TseFI	GTSAC	2 cut(s)	52, 190
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	2 cut(s)	52, 190
TspDTI	ATGAA	3 cut(s)	678, 696, 718
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	5 cut(s)	61, 513, 574, 598, 772
XapI	RAATTY	2 cut(s)	526, 684
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	2 cut(s)	98, 781
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.