Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

37299254 .. 37301138

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTGACCTTTGCTACTCCCAAACTGCTTGGCTTGGATTATGGGATTGAAACCAAATTGTCATCCACGGTGGCAATGATACAAGGATATGCCATTGTCGAAGAGCTAGCAGGACCAGTCCATACCTGCGCTCGTAACCAAGAACTGATTGACGAGAGGGTTCGTGAATGGAAGAACCAGGGATTCAAAGTGAGTGGTTCAGTTTGTGACCTAACCTCTAAATCTCAAAGGGAGGAGCTCATAAAGACCGCTTCATCTGTCTTCAACGGCAAACTCAACATCCTTGTAAACAATGCAGCAACAGTGACACTGAGAAGTACTGCAGAATATGCATTGGAAGATTTGTCAAGCATGATGAGTACAAATGTTGAATCTCCCTACCATCTTTGTCAGCTTTCTTATCCTCTCTTGACGGCCTCAGGAAATGGAAGTATTGTGTTCGTCGCCTCCATTGCCGGTATAAAAGCTCTACCAAGTCTATCTGCCTATGCAGCAACGAAAAGTGCCGTCATCCAAATTTCGAAGAATTTGGCATGTGAATGGGCAAAAGATGGCATTCGCACAAACACTGTAGCACCATGGGCTGTTAACACCGGGGTTAAAGTTGAAAATGTAAGCTTCCTCTCCAAACCTTCCACTAATAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

216

Amino Acids

23.22

Weight (kDa)

8.31

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	32 - 203	1.4e-37	short chain dehydrogenase
adh_short_C2	PF13561	40 - 200	2.6e-31	Enoyl-(Acyl carrier protein) reductase
KR	PF08659	46 - 170	3.5e-07	KR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	516, 526
AfaI	GTAC	2 cut(s)	319, 361
AgsI	TTSAA	5 cut(s)	50, 187, 265, 371, 608
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	106, 238, 394, 467, 618
AluI	AGCT	5 cut(s)	106, 238, 394, 467, 618
Alw21I	GWGCWC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	296, 491
ApoI	RAATTY	2 cut(s)	516, 526
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	521
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	308, 503
BccI	CCATC	2 cut(s)	390, 545
BceAI	ACGGC	3 cut(s)	283, 429, 491
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	595
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	321, 570
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	297, 492
BlsI	GCNGC	2 cut(s)	298, 493
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	179, 595
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	179, 595
BmtI	GCTAGC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	595
BsaJI	CCNNGG	4 cut(s)	66, 178, 578, 594
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	418
Bse3DI	GCAATG	2 cut(s)	81, 450
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	66, 178, 578, 594
BseGI	GGATG	3 cut(s)	62, 279, 510
BseMI	GCAATG	2 cut(s)	81, 450
BseMII	CTCAG	2 cut(s)	302, 432
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	308, 503
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	456, 594
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	303, 431
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	521
BsrDI	GCAATG	2 cut(s)	81, 450
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	66, 178, 578, 594
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	70, 304, 571
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	311, 418
BstDSI	CCRYGG	2 cut(s)	66, 578
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	3 cut(s)	62, 279, 510
BstHHI	GCGC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 452, 491, 581
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	537
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	177, 593
BstSFI	CTRYAG	2 cut(s)	321, 570
BstV1I	GCAGC	2 cut(s)	308, 503
BstV2I	GAAGAC	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	2 cut(s)	66, 578
BtsCI	GGATG	3 cut(s)	62, 279, 510
BtsIMutI	CAGTG	3 cut(s)	308, 309, 567
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	318, 360
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	3 cut(s)	352, 534, 579
CviJI	RGCY	8 cut(s)	33, 106, 238, 394, 416, 467, 584, 618
CviKI_1	RGCY	8 cut(s)	33, 106, 238, 394, 416, 467, 584, 618
CviQI	GTAC	2 cut(s)	318, 360
DdeI	CTNAG	2 cut(s)	311, 418
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	418
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	355, 537, 582
FatI	CATG	3 cut(s)	351, 533, 578
Fnu4HI	GCNGC	2 cut(s)	297, 492
FokI	GGATG	3 cut(s)	49, 266, 497
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	297, 492
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	297, 492
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	456, 594
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	355, 537, 582
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	183, 371
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	2 cut(s)	456, 594
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	289, 589
Hpy188III	TCNNGA	3 cut(s)	164, 409, 420
Hpy8I	GTNNAC	2 cut(s)	289, 589
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	3 cut(s)	70, 304, 571
HpyCH4V	TGCA	4 cut(s)	296, 323, 332, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 452, 491, 581
HpyF3I	CTNAG	2 cut(s)	311, 418
Hsp92II	CATG	3 cut(s)	355, 537, 582
HspAI	GCGC	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	589
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	96, 129, 139, 164, 191, 405, 469, 607
Lsp1109I	GCAGC	2 cut(s)	308, 503
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	4 cut(s)	4, 134, 206, 304
MboII	GAAGA	5 cut(s)	113, 184, 253, 350, 535
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	56, 516, 526
MnlI	CCTC	7 cut(s)	150, 226, 226, 414, 427, 457, 632
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	3 cut(s)	588, 600, 649
MslI	CAYNNNNRTG	1 cut(s)	538
MspI	CCGG	2 cut(s)	456, 594
MspR9I	CCNGG	2 cut(s)	179, 595
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	329, 452, 491, 581
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	578
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	355, 537, 582
NmuCI	GTSAC	3 cut(s)	4, 206, 304
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	183, 371
PkrI	GCNGC	2 cut(s)	298, 493
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	319, 361
RsaNI	GTAC	2 cut(s)	318, 360
RseI	CAYNNNNRTG	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	588, 600, 649
SatI	GCNGC	2 cut(s)	297, 492
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	179, 595
SduI	GDGCHC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	321, 570
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	538
Sse9I	AATT	3 cut(s)	56, 516, 526
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	177, 593
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	3 cut(s)	70, 304, 571
TaqI	TCGA	2 cut(s)	99, 521
TasI	AATT	3 cut(s)	56, 516, 526
TatI	WGTACW	2 cut(s)	317, 359
TfiI	GAWTC	2 cut(s)	183, 371
Tru1I	TTAA	3 cut(s)	588, 600, 649
Tru9I	TTAA	3 cut(s)	588, 600, 649
TscAI	CASTG	3 cut(s)	309, 315, 574
TseFI	GTSAC	3 cut(s)	4, 206, 304
TseI	GCWGC	2 cut(s)	296, 491
Tsp45I	GTSAC	3 cut(s)	4, 206, 304
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	309, 315, 574
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	516, 526
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.