Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

12033231 .. 12035364

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTGGGAAAGGTTTCAGCAGTGAAAGATGGTCTCTAAAAGGCAAGACCGCCCTCGTCACTGGTGGAACGAAAGGCATCGGGTTTGCAATTGTGGAGGAGCTAGCGGGACTTGGCGCAACTGTACATACCTGTGCTCGTAACGAAGCCCTGCTTAATGAGAGGATTCAAGAATGGGAGAGTAAGGGATTTAAAGTGAGTAGTTCAGTTTGTGACCTGACCTCTAAATCCCAAAGGGAGGAGCTGTTGGAGACTGTCTCCTCTGTTTTCGATGGAAAGCTTAACATCCTTGTAAATAATGCAGCAACTGTCACACTCAGAACTACTACAGACTATTCTTTGGAAGATTTTTCAAGCATGATGAGTACCAATGTCGAATCTCCTTACCACCTTTGTCAACTTGCACATCCTCTCTTGAAGGCCTCAGGCAATGGAAGTATTGTATTCATCGCCTCCATCGCTGGTATAAAAGCTTTGCCTAGACTATCTGCCTACGCAGCAACAAAAAGCGCTGTCATCCAGATTTCAAAGAATTTGGCTTGTGAATGGGCACAGGATAGTATTCGGGCAAACACTGTAGCACCATGGGCTGTCAATACCGGGGCTAAACCTGATAATGTGAATAGCTCCTCAAAATCCTACAACTTTTTTTTGAAAATGACCTTGTGTCTTAGTTTATTACTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

229

Amino Acids

24.53

Weight (kDa)

8.57

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	16 - 203	2.2e-49	short chain dehydrogenase
KR	PF08659	17 - 171	1.2e-13	KR domain
adh_short_C2	PF13561	25 - 215	1.5e-40	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 107
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	2 cut(s)	126, 367
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	170, 354, 418, 528, 655
AhdI	GACNNNNNGTC	1 cut(s)	666
AhlI	ACTAGT	1 cut(s)	682
AluBI	AGCT	5 cut(s)	103, 244, 280, 473, 627
AluI	AGCT	5 cut(s)	103, 244, 280, 473, 627
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	3 cut(s)	39, 245, 262
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	302, 497
ApoI	RAATTY	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	119, 512
AsuC2I	CCSGG	1 cut(s)	601
AsuNHI	GCTAGC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	314, 509
BccI	CCATC	3 cut(s)	24, 266, 464
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	3 cut(s)	39, 245, 262
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	3 cut(s)	104, 480, 683
BfmI	CTRYAG	2 cut(s)	327, 576
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	2 cut(s)	303, 498
BlsI	GCNGC	2 cut(s)	304, 499
Bme1390I	CCNGG	1 cut(s)	601
BmeRI	GACNNNNNGTC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpuMI	CCSGG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	584, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	67
Bse21I	CCTNAGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	584, 600
BseGI	GGATG	3 cut(s)	285, 406, 516
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	331, 438
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	4 cut(s)	113, 250, 254, 619
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	314, 509
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	39, 245, 262
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	139, 553
Bsp1407I	TGTACA	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	2 cut(s)	51, 107
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	2 cut(s)	330, 437
BspOI	GCTAGC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	436
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	584, 600
BssT1I	CCWWGG	1 cut(s)	584
Bst4CI	ACNGT	4 cut(s)	124, 256, 310, 577
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	317, 424, 671
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	285, 406, 516
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	119, 512
BstMAI	GTCTC	3 cut(s)	39, 245, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 497, 587
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	327, 576
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	314, 509
Bsu36I	CCTNAGG	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	584
BtgZI	GCGATG	2 cut(s)	433, 442
BtsCI	GGATG	3 cut(s)	285, 406, 516
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	28, 60, 573
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	119, 512
Csp6I	GTAC	2 cut(s)	125, 366
CviAII	CATG	2 cut(s)	358, 585
CviQI	GTAC	2 cut(s)	125, 366
DdeI	CTNAG	3 cut(s)	317, 424, 671
DraI	TTTAAA	1 cut(s)	193
DriI	GACNNNNNGTC	1 cut(s)	666
Eam1105I	GACNNNNNGTC	1 cut(s)	666
Eco130I	CCWWGG	1 cut(s)	584
Eco147I	AGGCCT	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	511
Eco81I	CCTNAGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	2 cut(s)	361, 588
FaiI	YATR	5 cut(s)	129, 359, 467, 586, 688
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	357, 584
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	303, 498
FokI	GGATG	3 cut(s)	272, 393, 503
Fsp4HI	GCNGC	2 cut(s)	303, 498
FspBI	CTAG	3 cut(s)	104, 480, 683
GlaI	GCGC	2 cut(s)	118, 511
GluI	GCNGC	2 cut(s)	303, 498
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	600
HhaI	GCGC	2 cut(s)	119, 512
Hin1II	CATG	2 cut(s)	361, 588
Hin6I	GCGC	2 cut(s)	117, 510
HinP1I	GCGC	2 cut(s)	117, 510
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HindIII	AAGCTT	2 cut(s)	278, 471
HinfI	GANTC	2 cut(s)	166, 377
HpaII	CCGG	1 cut(s)	600
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	170, 415, 520
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	4 cut(s)	124, 256, 310, 577
HpyCH4V	TGCA	3 cut(s)	89, 302, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 497, 587
HpyF3I	CTNAG	3 cut(s)	317, 424, 671
Hsp92II	CATG	2 cut(s)	361, 588
HspAI	GCGC	2 cut(s)	117, 510
LmnI	GCTCC	3 cut(s)	100, 241, 632
Lsp1109I	GCAGC	2 cut(s)	314, 509
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	3 cut(s)	104, 480, 683
MaeIII	GTNAC	4 cut(s)	58, 140, 212, 310
MboII	GAAGA	1 cut(s)	356
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	139, 553
MluCI	AATT	2 cut(s)	90, 532
MmeI	TCCRAC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	3 cut(s)	156, 192, 282
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	601
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	458, 497, 587
NciI	CCSGG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	584
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	361, 588
NmuCI	GTSAC	3 cut(s)	58, 212, 310
PceI	AGGCCT	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	166, 377
PkrI	GCNGC	2 cut(s)	304, 499
PspFI	CCCAGC	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	308
RsaI	GTAC	2 cut(s)	126, 367
RsaNI	GTAC	2 cut(s)	125, 366
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	156, 192, 282
SatI	GCNGC	2 cut(s)	303, 498
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	139, 553
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	327, 576
SmiMI	CAYNNNNRTG	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	682
Sse9I	AATT	2 cut(s)	90, 532
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	2 cut(s)	51, 107
SspMI	CTAG	3 cut(s)	104, 480, 683
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	4 cut(s)	124, 256, 310, 577
TaqI	TCGA	2 cut(s)	270, 375
TasI	AATT	2 cut(s)	90, 532
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	166, 377
Tru1I	TTAA	3 cut(s)	156, 192, 282
Tru9I	TTAA	3 cut(s)	156, 192, 282
TscAI	CASTG	3 cut(s)	28, 67, 580
TseFI	GTSAC	3 cut(s)	58, 212, 310
TseI	GCWGC	2 cut(s)	302, 497
Tsp45I	GTSAC	3 cut(s)	58, 212, 310
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	3 cut(s)	28, 67, 580
XapI	RAATTY	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	3 cut(s)	104, 480, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.