Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001690

Physical Location & Seq

Genomic Coordinates Reverse (-)

14747452 .. 14748722

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTGGGTTCAAAAGCCAAAGATGGTCTCTTAAGGGTATGACTGCACTCGTCACCAGTGGAACTAGAGGCATTGGGTATGCCATTGTAGAAGAATTAGCAGGACTTGGAGCAACAGTGCATACCTGTGCTCGTAACAAGGCACTAATCGATGAAAGGGTTCAAGAGTGGAAAATTAAGGGTTTTACAGTGAGTGGTTCAGTTTGTGACCTCACATCTAAATCTCAAAGGGAGGAGCTCATAAAGACTGTCTCATCTGCTTTCGATGGCAAGCTTAGTATCCTTGTAAACAATGCTGCAATAGTCACACTCAGAGGAACTACAGATTATAGTTTAGAAGATTTCTCAAGTATGATGAGCAGTAATGTTGAGTCTCCCTACCATCTTTGTCAACTGGCACATCCTCTTCTCAAGGCATCAGGAAATGGAAGCATTATTTTTGTTTCCTCTATTGCTGGTGTAATAGCTCTGCCTAAACTGTCTGCCTATGCAGCCACTAAAGGAGCAATCATTCAGATTTCAAAGAACTTGGCATGTGAATGGGCAAAGGATAAAATTCGAACAAACACTGTAGCACCATGGGCTGTCAAGTGTCAACACTGGGGCAGCAGCAATGAGCAACGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTCGTCGCCTTGCAGACCCTAATGAAATTTCATCTCTAGTGACATTTCTTTGCCTCCCAGCTGCTTCTTATATCAATGGACAAGTTGTTAGCATTGATGGAGGATTTACAGTTAGTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

261

Amino Acids

28.05

Weight (kDa)

9.15

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 208	2.7e-46	short chain dehydrogenase
KR	PF08659	15 - 167	2.6e-11	KR domain
adh_short_C2	PF13561	22 - 256	4e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13100 FvH4_6g13100 FvH4_6g13110 FvH4_6g13120 FvH4_6g21191
malus_domestica	MD04G1134900.v1.1 MD04G1135200.v1.1 MD04G1135300.v1.1 MD12G1148400.v1.1 MD12G1148500.v1.1 MD12G1148600.v1.1 MD12G1148800.v1.1 MD12G1149000.v1.1
pyrus_communis	pycom04g12230 pycom04g12240 pycom12g14270 pycom12g14280
rosa_chinensis	RchiOBHm_Chr3g0465411 RchiOBHm_Chr3g0465421 RchiOBHm_Chr3g0465491 RchiOBHm_Chr3g0477681
rosa_laevigata	RLG00000023701
rosa_multiflora	Rmu_sc0006187.1_g000004 Rmu_sc0011781.1_g000007 Rmu_sc0011781.1_g000008 Rmu_sc0011781.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403760 Rroxscaffold_6G00415030 Rroxscaffold_6G00415050 Rroxscaffold_6G00415060
rosa_rugosa	Rorug03G0076400 Rorug03G0076500 Rorug03G0076600 Rorug03G0076700.1 Rorug03G0076800
rosa_samantha	Rh3AG212800 Rh3BG141700 Rh3BG141800 Rh3BG142100 Rh3BG246400 Rh3CG142800 Rh3CG142900 Rh3CG143400 Rh3CG240000 Rh3DG142800 Rh3DG142900 Rh3DG143200
rosa_wichuraiana	Rw3G011590 Rw3G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	555, 684
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	13, 164, 522
AluBI	AGCT	5 cut(s)	238, 274, 467, 647, 719
AluI	AGCT	5 cut(s)	238, 274, 467, 647, 719
Alw21I	GWGCWC	2 cut(s)	133, 240
Alw26I	GTCTC	3 cut(s)	33, 256, 378
ApeKI	GCWGC	5 cut(s)	296, 491, 606, 609, 719
ApoI	RAATTY	2 cut(s)	555, 684
Asp700I	GAANNNNTTC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	133, 240
BbvI	GCAGC	5 cut(s)	283, 503, 618, 621, 706
BccI	CCATC	4 cut(s)	18, 260, 390, 749
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	33, 256, 378
BfaI	CTAG	3 cut(s)	66, 695, 781
BfmI	CTRYAG	2 cut(s)	321, 570
BfrI	CTTAAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	5 cut(s)	297, 492, 607, 610, 720
BlsI	GCNGC	5 cut(s)	298, 493, 608, 611, 721
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	559
BpuEI	CTTGAG	2 cut(s)	331, 395
Bsa29I	ATCGAT	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse1I	ACTGG	3 cut(s)	57, 399, 605
Bse3DI	GCAATG	1 cut(s)	619
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	3 cut(s)	57, 399, 605
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	5 cut(s)	283, 503, 618, 621, 706
BseYI	CCCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	133, 240
BsmAI	GTCTC	3 cut(s)	33, 256, 378
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	133, 240
Bsp19I	CCATGG	1 cut(s)	578
BspCNI	CTCAG	1 cut(s)	324
BspDI	ATCGAT	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	3 cut(s)	57, 399, 605
BssECI	CCNNGG	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	6 cut(s)	118, 190, 250, 480, 571, 769
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	275, 311
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	400
BstMAI	GTCTC	3 cut(s)	33, 256, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 581
BstNSI	RCATGY	1 cut(s)	537
BstSFI	CTRYAG	2 cut(s)	321, 570
BstV1I	GCAGC	5 cut(s)	283, 503, 618, 621, 706
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	5 cut(s)	64, 123, 195, 567, 598
Cac8I	GCNNGC	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	150
CviAII	CATG	2 cut(s)	534, 579
CviJI	RGCY	9 cut(s)	18, 238, 274, 467, 494, 584, 640, 647, 719
CviKI_1	RGCY	9 cut(s)	18, 238, 274, 467, 494, 584, 640, 647, 719
DdeI	CTNAG	2 cut(s)	275, 311
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	2 cut(s)	537, 582
FatI	CATG	2 cut(s)	533, 578
Fnu4HI	GCNGC	5 cut(s)	297, 492, 607, 610, 720
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	5 cut(s)	297, 492, 607, 610, 720
FspBI	CTAG	3 cut(s)	66, 695, 781
GluI	GCNGC	5 cut(s)	297, 492, 607, 610, 720
GsaI	CCCAGC	1 cut(s)	719
Hin1II	CATG	2 cut(s)	537, 582
HincII	GTYRAC	2 cut(s)	392, 596
HindII	GTYRAC	2 cut(s)	392, 596
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	371
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	289, 392, 596
Hpy188I	TCNGA	3 cut(s)	314, 516, 635
Hpy188III	TCNNGA	2 cut(s)	164, 420
Hpy8I	GTNNAC	3 cut(s)	289, 392, 596
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	6 cut(s)	118, 190, 250, 480, 571, 769
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	5 cut(s)	47, 121, 299, 491, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 581
HpyF3I	CTNAG	2 cut(s)	275, 311
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	2 cut(s)	537, 582
LmnI	GCTCC	3 cut(s)	110, 235, 503
LpnPI	CCDG	8 cut(s)	70, 87, 139, 380, 405, 441, 586, 729
Lsp1109I	GCAGC	5 cut(s)	283, 503, 618, 621, 706
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	66, 695, 781
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	5 cut(s)	52, 134, 206, 304, 697
MboII	GAAGA	3 cut(s)	104, 350, 398
MhlI	GDGCHC	2 cut(s)	133, 240
MluCI	AATT	4 cut(s)	95, 174, 555, 684
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	62, 221, 226, 308, 414, 457, 722, 752
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	33, 177
MslI	CAYNNNNRTG	2 cut(s)	126, 538
MspA1I	CMGCKG	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	491, 581
NcoI	CCATGG	1 cut(s)	578
NlaIII	CATG	2 cut(s)	537, 582
NmuCI	GTSAC	4 cut(s)	52, 206, 304, 697
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	298, 493, 608, 611, 721
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	719
RseI	CAYNNNNRTG	2 cut(s)	126, 538
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	33, 177
SatI	GCNGC	5 cut(s)	297, 492, 607, 610, 720
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	133, 240
SetI	ASST	8 cut(s)	128, 213, 240, 276, 469, 625, 649, 721
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	321, 570
SfuI	TTCGAA	1 cut(s)	559
SmiMI	CAYNNNNRTG	2 cut(s)	126, 538
SmlI	CTYRAG	3 cut(s)	32, 346, 410
SmoI	CTYRAG	3 cut(s)	32, 346, 410
Sse9I	AATT	4 cut(s)	95, 174, 555, 684
SspMI	CTAG	3 cut(s)	66, 695, 781
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	6 cut(s)	118, 190, 250, 480, 571, 769
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	4 cut(s)	150, 264, 559, 649
TasI	AATT	4 cut(s)	95, 174, 555, 684
Tru1I	TTAA	2 cut(s)	33, 177
Tru9I	TTAA	2 cut(s)	33, 177
TscAI	CASTG	5 cut(s)	64, 123, 195, 574, 605
TseFI	GTSAC	4 cut(s)	52, 206, 304, 697
TseI	GCWGC	5 cut(s)	296, 491, 606, 609, 719
Tsp45I	GTSAC	4 cut(s)	52, 206, 304, 697
TspDTI	ATGAA	3 cut(s)	168, 678, 696
TspRI	CASTG	5 cut(s)	64, 123, 195, 574, 605
Vha464I	CTTAAG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	555, 684
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	66, 695, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.