FvH4_6g17070

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002880
Physical Location & Seq
Forward (+)
11033578 .. 11035307
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17070.t1

Sequence Viewer

Length: 1482 bp
ATGGCTTCAGAATTCCATGATCAGCTTCACTTTGTTTTGATACCCCTAATGTCTCCTGGCCACCTTATACCAATGGCAGACATGGCTAAGCTATTGGCACATCATGGTCTGGAGGTCACAATTATCACCACTCCCCTCAATGCCATTGGAATCAAACCAATCATTGATCGTGTTGTTGATTCAGGTCTCTCCCTAAATCTAGTCCAGTTCAGTTTGCCACTTTCTGAGTGTGGCTTGCCAGAGGGATGTGAAACATTGGAATCTGTCCCTGCAAGAAACTTGTTTCGAAATTTCTTTGATGCAGTTAGCAGGATGCAGCAACCAGTGGAACAATTGCTTGAGACAGTAAAACCGATTCCGAGCTGCATTGTCTCAGACAAACATCTGCCATGGACAGGTGAGATTGCTCAAAAGTTTGGGATACCGAGGTATTGGTTTGATGGGACTAGTTGCTTTACTCTATTGTCTAACCATCTTATAGGGACATCCAAGATCGTTGAGAGTGTTTCCGGATCAGAATCATTCCTGGTGCCTGGTTTACCTGATGAGATTGAGCTTATTTTAGCCCAACTACCGGCGCATTTGAATCCTTCTAATGTGGACTTCAGAGATTTCCACAGAGAAGTAGAGGAAGCTACAAAAGGATCATCTGGGGTAATTGTAAATAGCTTTGAGGAATTGGAGACAGAGTATGTCAAAGAGTATAGAAAGGTTAGTAATGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAACACAGACTTTGACAAAGCTCAAAGAGGCCACAAGGCCTCCATTGATCAGAACCAGTGCTTGAGATGGCTTAACTCATGGCCTGAGAACTCAGTTGTTTATGTATGTCTTGGAAGCCTCGGCCGTATTGCAACTCCTCAGTTGCTAGAGCTTGGATTAGGCCTGGAAGCATCAAACCGGCCTTTCGTTTGGGTGATCAGTGGAGACAAATCAGAAGAATGGGGGAATTGGTTGTTGGAAGGGGGATTTGAGGACAGGATTAAAGGTAGAGGCCTTTTAATCCATGGTTGGGCACCACAAATATTGATATTGTCACATCCTGCAGTTGGTGGATTTTTAACACATTGCGGTTGGAATTCGACATTGGAAGCGATATGTGCTGGTATCCCAATGATAACGTGGCCTATGTTTGCTGAGCAGTTCTATAATGAGAAGTTCATAGTGCAAGTGTTGAAGATTGGTGTGACAGTTGGGGCCTCAGGGGTCATTCCTTTGGGGAAACAAGAAGGGTCTGTTGTTTCGGTGAAGAGTGGCCAGTTTAAGGAGGCCATAGAGAAAGTGATGAGCAAGGAAGGGAATAAAGAAGGAGAAGATAGAAGAGAAAGAGCAAGAAAGCTTGCAATGATGGCCAACAAATCTACATTCGAGGGAGGCTCTTCTTACCATAATATTAGACTATTAACAGAAGATATCAGATCATACAGAAACAAATTAGCATTCCAGAATTGA

Protein Analysis

494

Amino Acids

54.72

Weight (kDa)

5.67

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 238 - 400 1.8e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 529, 1045
AccIII TCCGGA 1 cut(s) 509
AciI CCGC 1 cut(s) 1101
AclWI GGATC 2 cut(s) 520, 652
AcoI YGGCCR 4 cut(s) 58, 874, 1285, 1380
AcsI RAATTY 3 cut(s) 11, 289, 1108
AcuI CTGAAG 1 cut(s) 589
AfiI CCNNNNNNNGG 5 cut(s) 395, 574, 1042, 1079, 1294
AgsI TTSAA 2 cut(s) 586, 1207
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 4 cut(s) 55, 525, 532, 915
AjuI GAANNNNNNNTTGG 4 cut(s) 971, 1003, 1100, 1132
AluBI AGCT 9 cut(s) 25, 91, 363, 556, 635, 669, 773, 904, 1369
AluI AGCT 9 cut(s) 25, 91, 363, 556, 635, 669, 773, 904, 1369
Alw26I GTCTC 6 cut(s) 57, 191, 335, 376, 677, 951
AlwI GGATC 2 cut(s) 520, 652
Aor13HI TCCGGA 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 316, 363
ApoI RAATTY 3 cut(s) 11, 289, 1108
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 734, 1227
AsuHPI GGTGA 4 cut(s) 118, 410, 958, 1288
AsuII TTCGAA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 1 cut(s) 1231
BaeGI GKGCMC 1 cut(s) 1048
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BalI TGGCCA 3 cut(s) 60, 1287, 1382
BanI GGYRCC 2 cut(s) 529, 1045
BbvI GCAGC 2 cut(s) 328, 350
BccI CCATC 4 cut(s) 434, 480, 813, 1372
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 4 cut(s) 57, 527, 534, 917
BciVI GTATCC 2 cut(s) 414, 1148
BclI TGATCA 3 cut(s) 19, 799, 948
BcoDI GTCTC 6 cut(s) 57, 191, 335, 376, 677, 951
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 3 cut(s) 200, 447, 899
BfmI CTRYAG 1 cut(s) 1074
BfuI GTATCC 2 cut(s) 414, 1148
BisI GCNGC 2 cut(s) 317, 364
BlpI GCTNAGC 2 cut(s) 87, 1167
BlsI GCNGC 2 cut(s) 318, 365
Bme1390I CCNGG 4 cut(s) 57, 527, 534, 917
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 734, 1227
BmiI GGNNCC 3 cut(s) 531, 1047, 1228
BmrFI CCNGG 4 cut(s) 57, 527, 534, 917
BmsI GCATC 3 cut(s) 289, 303, 932
BplI GAGNNNNNCTC 2 cut(s) 1391, 1423
BpmI CTGGAG 1 cut(s) 131
Bpu1102I GCTNAGC 2 cut(s) 87, 1167
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 359, 835
BsaBI GATNNNNATC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 389, 425, 871, 1036
BsaWI WCCGGW 1 cut(s) 509
BsaXI ACNNNNNCTCC 6 cut(s) 674, 704, 718, 748, 776, 806
Bsc4I CCNNNNNNNGG 5 cut(s) 395, 574, 1042, 1079, 1294
Bse118I RCCGGY 2 cut(s) 574, 930
Bse1I ACTGG 5 cut(s) 205, 323, 737, 808, 1288
Bse21I CCTNAGG 1 cut(s) 1231
Bse3DI GCAATG 2 cut(s) 1096, 1380
Bse8I GATNNNNATC 1 cut(s) 517
BseAI TCCGGA 1 cut(s) 509
BseBI CCWGG 4 cut(s) 57, 527, 534, 917
BseDI CCNNGG 4 cut(s) 389, 425, 871, 1036
BseGI GGATG 4 cut(s) 251, 318, 485, 1069
BseJI GATNNNNATC 1 cut(s) 517
BseLI CCNNNNNNNGG 5 cut(s) 395, 574, 1042, 1079, 1294
BseMI GCAATG 2 cut(s) 1096, 1380
BseMII CTCAG 7 cut(s) 216, 387, 828, 858, 905, 1158, 1245
BseNI ACTGG 5 cut(s) 205, 323, 737, 808, 1288
BseRI GAGGAG 1 cut(s) 879
BseSI GKGCMC 1 cut(s) 1048
BseX3I CGGCCG 1 cut(s) 874
BseXI GCAGC 2 cut(s) 328, 350
Bsh1285I CGRYCG 1 cut(s) 877
BshNI GGYRCC 2 cut(s) 529, 1045
BsiEI CGRYCG 1 cut(s) 877
BsiSI CCGG 3 cut(s) 510, 575, 931
BslFI GGGAC 3 cut(s) 251, 457, 496
BslI CCNNNNNNNGG 5 cut(s) 395, 574, 1042, 1079, 1294
BsmAI GTCTC 6 cut(s) 57, 191, 335, 376, 677, 951
BsmFI GGGAC 3 cut(s) 251, 457, 496
BsmI GAATGC 1 cut(s) 1469
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp13I TCCGGA 1 cut(s) 509
Bsp143I GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
Bsp1720I GCTNAGC 2 cut(s) 87, 1167
Bsp19I CCATGG 2 cut(s) 389, 1036
BspACI CCGC 1 cut(s) 1101
BspCNI CTCAG 7 cut(s) 217, 386, 829, 857, 904, 1159, 1244
BspEI TCCGGA 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 531, 1047, 1228
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 2 cut(s) 520, 652
BspQI GCTCTTC 1 cut(s) 1414
BspT104I TTCGAA 1 cut(s) 286
BspT107I GGYRCC 2 cut(s) 529, 1045
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 1096, 1380
BsrFI RCCGGY 2 cut(s) 574, 930
BsrI ACTGG 5 cut(s) 205, 323, 737, 808, 1288
BssAI RCCGGY 2 cut(s) 574, 930
BssECI CCNNGG 4 cut(s) 389, 425, 871, 1036
BssMI GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
BssT1I CCWWGG 2 cut(s) 389, 1036
Bst2UI CCWGG 4 cut(s) 57, 527, 534, 917
Bst4CI ACNGT 2 cut(s) 346, 1222
Bst6I CTCTTC 3 cut(s) 1274, 1345, 1414
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 236, 1371
BstDEI CTNAG 8 cut(s) 87, 225, 373, 837, 844, 891, 1167, 1231
BstDSI CCRYGG 2 cut(s) 389, 1036
BstF5I GGATG 4 cut(s) 251, 318, 485, 1069
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 8 cut(s) 22, 169, 495, 515, 647, 802, 951, 1451
BstMAI GTCTC 6 cut(s) 57, 191, 335, 376, 677, 951
BstMBI GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
BstMCI CGRYCG 1 cut(s) 877
BstMWI GCNNNNNNNGC 3 cut(s) 83, 1130, 1379
BstNI CCWGG 4 cut(s) 57, 527, 534, 917
BstSCI CCNGG 4 cut(s) 55, 525, 532, 915
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 1048
BstV1I GCAGC 2 cut(s) 328, 350
BstZI CGGCCG 1 cut(s) 874
Bsu36I CCTNAGG 1 cut(s) 1231
BsuI GTATCC 2 cut(s) 414, 1148
BtgI CCRYGG 2 cut(s) 389, 1036
BtsCI GGATG 4 cut(s) 251, 318, 485, 1069
BtsIMutI CAGTG 4 cut(s) 330, 744, 815, 958
Cac8I GCNNGC 2 cut(s) 236, 1371
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 2 cut(s) 574, 930
Cfr13I GGNCC 2 cut(s) 734, 1227
CspCI CAANNNNNGTGG 2 cut(s) 1038, 1073
CviAII CATG 6 cut(s) 17, 82, 104, 390, 831, 1037
DdeI CTNAG 8 cut(s) 87, 225, 373, 837, 844, 891, 1167, 1231
DpnI GATC 8 cut(s) 21, 168, 494, 514, 646, 801, 950, 1450
DpnII GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
EaeI YGGCCR 4 cut(s) 58, 874, 1285, 1380
EagI CGGCCG 1 cut(s) 874
Eam1104I CTCTTC 3 cut(s) 1274, 1345, 1414
EarI CTCTTC 3 cut(s) 1274, 1345, 1414
EclXI CGGCCG 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 389, 1036
Eco147I AGGCCT 3 cut(s) 791, 915, 1026
Eco31I GGTCTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 1 cut(s) 734
Eco52I CGGCCG 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 589
Eco81I CCTNAGG 1 cut(s) 1231
EcoO109I RGGNCCY 1 cut(s) 1227
EcoRI GAATTC 2 cut(s) 11, 1108
EcoRII CCWGG 4 cut(s) 55, 525, 532, 915
EcoRV GATATC 1 cut(s) 1444
EcoT14I CCWWGG 2 cut(s) 389, 1036
ErhI CCWWGG 2 cut(s) 389, 1036
FaeI CATG 6 cut(s) 20, 85, 107, 393, 834, 1040
FaqI GGGAC 3 cut(s) 251, 457, 496
FatI CATG 6 cut(s) 16, 81, 103, 389, 830, 1036
FbaI TGATCA 3 cut(s) 19, 799, 948
Fnu4HI GCNGC 2 cut(s) 317, 364
FokI GGATG 4 cut(s) 258, 325, 472, 1056
Fsp4HI GCNGC 2 cut(s) 317, 364
FspBI CTAG 3 cut(s) 200, 447, 899
GlaI GCGC 1 cut(s) 579
GluI GCNGC 2 cut(s) 317, 364
GsuI CTGGAG 1 cut(s) 131
HapII CCGG 3 cut(s) 510, 575, 931
HhaI GCGC 1 cut(s) 580
Hin1II CATG 6 cut(s) 20, 85, 107, 393, 834, 1040
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 1367
HinfI GANTC 6 cut(s) 150, 179, 260, 355, 518, 586
HpaII CCGG 3 cut(s) 510, 575, 931
HphI GGTGA 4 cut(s) 118, 410, 958, 1288
Hpy166II GTNNAC 2 cut(s) 539, 601
Hpy188I TCNGA 9 cut(s) 10, 226, 360, 376, 517, 608, 804, 967, 1448
Hpy188III TCNNGA 3 cut(s) 110, 510, 1474
Hpy8I GTNNAC 2 cut(s) 539, 601
HpyAV CCTTC 5 cut(s) 600, 986, 1253, 1319, 1331
HpyCH4III ACNGT 2 cut(s) 346, 1222
HpyCH4IV ACGT 1 cut(s) 1151
HpyCH4V TGCA 8 cut(s) 272, 302, 316, 366, 884, 1076, 1198, 1373
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 1130, 1379
HpyF3I CTNAG 8 cut(s) 87, 225, 373, 837, 844, 891, 1167, 1231
HpySE526I ACGT 1 cut(s) 1151
Hsp92II CATG 6 cut(s) 20, 85, 107, 393, 834, 1040
HspAI GCGC 1 cut(s) 578
Kpn2I TCCGGA 1 cut(s) 509
Ksp22I TGATCA 3 cut(s) 19, 799, 948
Kzo9I GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
LguI GCTCTTC 1 cut(s) 1414
Lsp1109I GCAGC 2 cut(s) 328, 350
LweI GCATC 3 cut(s) 289, 303, 932
MaeI CTAG 3 cut(s) 200, 447, 899
MaeII ACGT 1 cut(s) 1151
MaeIII GTNAC 4 cut(s) 115, 741, 1065, 1216
MalI GATC 8 cut(s) 21, 168, 494, 514, 646, 801, 950, 1450
MboI GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
MboII GAAGA 7 cut(s) 980, 1219, 1291, 1355, 1362, 1401, 1451
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 1048
MlsI TGGCCA 3 cut(s) 60, 1287, 1382
MluNI TGGCCA 3 cut(s) 60, 1287, 1382
MmeI TCCRAC 3 cut(s) 774, 969, 1085
Mox20I TGGCCA 3 cut(s) 60, 1287, 1382
MroI TCCGGA 1 cut(s) 509
MscI TGGCCA 3 cut(s) 60, 1287, 1382
MseI TTAA 6 cut(s) 825, 1014, 1031, 1091, 1293, 1433
Msp20I TGGCCA 3 cut(s) 60, 1287, 1382
MspI CCGG 3 cut(s) 510, 575, 931
MspR9I CCNGG 4 cut(s) 57, 527, 534, 917
MunI CAATTG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 1469
MvaI CCWGG 4 cut(s) 57, 527, 534, 917
MwoI GCNNNNNNNGC 3 cut(s) 83, 1130, 1379
NcoI CCATGG 2 cut(s) 389, 1036
NdeII GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
NlaIII CATG 6 cut(s) 20, 85, 107, 393, 834, 1040
NlaIV GGNNCC 3 cut(s) 531, 1047, 1228
NmeAIII GCCGAG 1 cut(s) 852
NmuCI GTSAC 4 cut(s) 115, 741, 1065, 1216
NspV TTCGAA 1 cut(s) 286
PceI AGGCCT 3 cut(s) 791, 915, 1026
PciSI GCTCTTC 1 cut(s) 1414
PctI GAATGC 1 cut(s) 1469
PfeI GAWTC 6 cut(s) 150, 179, 260, 355, 518, 586
PkrI GCNGC 2 cut(s) 318, 365
Psp6I CCWGG 4 cut(s) 55, 525, 532, 915
PspGI CCWGG 4 cut(s) 55, 525, 532, 915
PspN4I GGNNCC 3 cut(s) 531, 1047, 1228
PspPI GGNCC 2 cut(s) 734, 1227
PstI CTGCAG 1 cut(s) 1078
SapI GCTCTTC 1 cut(s) 1414
SaqAI TTAA 6 cut(s) 825, 1014, 1031, 1091, 1293, 1433
SatI GCNGC 2 cut(s) 317, 364
Sau3AI GATC 8 cut(s) 19, 166, 492, 512, 644, 799, 948, 1448
Sau96I GGNCC 2 cut(s) 734, 1227
ScrFI CCNGG 4 cut(s) 57, 527, 534, 917
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 3 cut(s) 289, 303, 932
SfcI CTRYAG 1 cut(s) 1074
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 1 cut(s) 734
SmlI CTYRAG 2 cut(s) 338, 814
SmoI CTYRAG 2 cut(s) 338, 814
SpeI ACTAGT 1 cut(s) 446
SseBI AGGCCT 3 cut(s) 791, 915, 1026
SsiI CCGC 1 cut(s) 1101
SspI AATATT 2 cut(s) 1056, 1423
SspMI CTAG 3 cut(s) 200, 447, 899
StuI AGGCCT 3 cut(s) 791, 915, 1026
StyD4I CCNGG 4 cut(s) 55, 525, 532, 915
StyI CCWWGG 2 cut(s) 389, 1036
TaaI ACNGT 2 cut(s) 346, 1222
TaiI ACGT 1 cut(s) 1154
TaqI TCGA 3 cut(s) 286, 1112, 1398
TfiI GAWTC 6 cut(s) 150, 179, 260, 355, 518, 586
Tru1I TTAA 6 cut(s) 825, 1014, 1031, 1091, 1293, 1433
Tru9I TTAA 6 cut(s) 825, 1014, 1031, 1091, 1293, 1433
TscAI CASTG 4 cut(s) 330, 744, 815, 958
TseFI GTSAC 4 cut(s) 115, 741, 1065, 1216
TseI GCWGC 2 cut(s) 316, 363
Tsp45I GTSAC 4 cut(s) 115, 741, 1065, 1216
TspDTI ATGAA 1 cut(s) 1180
TspRI CASTG 4 cut(s) 330, 744, 815, 958
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 3 cut(s) 11, 289, 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 1149
XspI CTAG 3 cut(s) 200, 447, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.