Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002012.1

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Reverse (-)

50921 .. 51766

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002012.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgaaggaatctgaagagggagcatgcggggttgttgtgaatagctttgaggatttggaaccagaatatttcaaagagtacagaaaggttagtagagtttggagtattggtccagtgtcgctatccaacgacaccgaattggacaaagctcagagaggaatcaaggcctcggttgatgaaaaccagtgcttaaaatggcttaattcatggcctgagagctcggtggtttatgtgtgtctcggaagccttagccgcgtagcaacccttcagttggtagagcttggtttaggcttggaagcatcaaatcagcctttcatttgggtggtcagcagaaataaaactgatgaatgggaaagttggttgttggaagatggatttgaagacaggattagagccaggggattgttaatctatggttgggctccacaaatactaatactgtcacatcctgcagttggtggatttctaacacattgtggttggaattcaactttggaagggatttgtgctgggattccaatgatcacatggcctatatttgctgagcagttctacaatgagaagttgatagtgcaagtcttgaagattggtgagaaagttggggctagtgtggcagttcagttggggaaacaagagcggtctgtggtgaccgtgaggagtggtgagcttaaggacgccatagagaaagtcatggtcaatgaacaaggagaagaaagaagacaaagagcaaagaggcttgcaatgatggccaagaaagctacagaggagggaggctcttcttactttaatattagactgttaattgaagatgtaatatcatataaacactctagcagtaccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

281

Amino Acids

31.53

Weight (kDa)

5.36

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	637
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	27, 253, 637
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	2 cut(s)	33, 251
AcyI	GRCGYC	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	80, 838
AfiI	CCNNNNNNNGG	2 cut(s)	271, 455
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	73, 380, 489, 583, 806
AjnI	CCWGG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	6 cut(s)	45, 149, 219, 280, 667, 758
AluI	AGCT	6 cut(s)	45, 149, 219, 280, 667, 758
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	242
AoxI	GGCC	4 cut(s)	165, 209, 530, 747
ApoI	RAATTY	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	602, 658, 674
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	749
BanII	GRGCYC	2 cut(s)	221, 424
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
BbsI	GAAGAC	2 cut(s)	387, 724
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	2 cut(s)	365, 739
BciT130I	CCWGG	1 cut(s)	397
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	606, 831
BfmI	CTRYAG	2 cut(s)	450, 759
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	60, 423
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	2 cut(s)	387, 724
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	168, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 455
Bse1I	ACTGG	2 cut(s)	113, 184
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	168, 396
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	271, 455
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	164, 204, 534
BseNI	ACTGG	2 cut(s)	113, 184
BseRI	GAGGAG	2 cut(s)	670, 779
BseYI	CCCAGC	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	167, 211, 532, 749
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	271, 455
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	167, 211, 532, 749
Bsp1286I	GDGCHC	2 cut(s)	221, 424
Bsp143I	GATC	1 cut(s)	522
Bsp1720I	GCTNAGC	1 cut(s)	543
BspACI	CCGC	3 cut(s)	27, 253, 637
BspANI	GGCC	4 cut(s)	167, 211, 532, 749
BspCNI	CTCAG	3 cut(s)	163, 205, 535
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	60, 423
BspMAI	CTGCAG	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	668
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	113, 184
BssECI	CCNNGG	2 cut(s)	168, 396
BssMI	GATC	1 cut(s)	522
BssNI	GRCGYC	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	3 cut(s)	441, 652, 798
Bst6I	CTCTTC	2 cut(s)	9, 781
BstACI	GRCGYC	1 cut(s)	675
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	25, 738
BstDEI	CTNAG	4 cut(s)	150, 213, 248, 543
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	525
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	522
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 611, 746, 755
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	2 cut(s)	450, 759
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	387, 724
BsuRI	GGCC	4 cut(s)	167, 211, 532, 749
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	120, 191
Cac8I	GCNNGC	2 cut(s)	25, 738
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	79, 837
CviAII	CATG	4 cut(s)	24, 207, 528, 691
CviQI	GTAC	2 cut(s)	79, 837
DdeI	CTNAG	4 cut(s)	150, 213, 248, 543
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	2 cut(s)	9, 781
EarI	CTCTTC	2 cut(s)	9, 781
Ecl136II	GAGCTC	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	221, 424
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	33, 251
Eco91I	GGTNACC	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	395
EcoT38I	GRGCYC	2 cut(s)	221, 424
FaeI	CATG	4 cut(s)	27, 210, 531, 694
FatI	CATG	4 cut(s)	23, 206, 527, 690
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	432
FriOI	GRGCYC	2 cut(s)	221, 424
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	606, 831
GluI	GCNGC	1 cut(s)	253
GsaI	CCCAGC	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	167, 211, 532, 749
HgaI	GACGC	1 cut(s)	683
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	4 cut(s)	27, 210, 531, 694
HinfI	GANTC	3 cut(s)	8, 159, 514
HphI	GGTGA	3 cut(s)	602, 658, 674
Hpy188I	TCNGA	3 cut(s)	13, 153, 242
Hpy188III	TCNNGA	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	275, 491
HpyCH4III	ACNGT	3 cut(s)	441, 652, 798
HpyCH4V	TGCA	3 cut(s)	452, 574, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 611, 746, 755
HpyF3I	CTNAG	4 cut(s)	150, 213, 248, 543
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	4 cut(s)	27, 210, 531, 694
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	522
LguI	GCTCTTC	1 cut(s)	781
LmnI	GCTCC	2 cut(s)	20, 427
LpnPI	CCDG	9 cut(s)	75, 126, 197, 225, 370, 382, 409, 462, 495
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	606, 831
MaeIII	GTNAC	2 cut(s)	441, 646
MalI	GATC	1 cut(s)	524
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	1 cut(s)	522
MboII	GAAGA	8 cut(s)	26, 380, 392, 595, 722, 729, 768, 818
MhlI	GDGCHC	2 cut(s)	221, 424
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	4 cut(s)	137, 202, 484, 801
MluNI	TGGCCA	1 cut(s)	749
MmeI	TCCRAC	3 cut(s)	150, 345, 461
MnlI	CCTC	9 cut(s)	10, 43, 149, 178, 648, 726, 757, 760, 764
Mox20I	TGGCCA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	6 cut(s)	191, 201, 407, 669, 786, 800
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	252, 611, 746, 755
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	4 cut(s)	27, 210, 531, 694
NlaIV	GGNNCC	2 cut(s)	60, 423
NmuCI	GTSAC	2 cut(s)	441, 646
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	8, 159, 514
PkrI	GCNGC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	395
PspEI	GGTNACC	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	60, 423
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	80, 838
RsaNI	GTAC	2 cut(s)	79, 837
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	781
SaqAI	TTAA	6 cut(s)	191, 201, 407, 669, 786, 800
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	522
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	221, 424
SetI	ASST	7 cut(s)	47, 90, 151, 221, 282, 669, 760
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	2 cut(s)	450, 759
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	137, 202, 484, 801
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	3 cut(s)	27, 253, 637
SspI	AATATT	2 cut(s)	68, 790
SspMI	CTAG	2 cut(s)	606, 831
SstI	GAGCTC	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	3 cut(s)	441, 652, 798
TasI	AATT	4 cut(s)	137, 202, 484, 801
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	8, 159, 514
Tru1I	TTAA	6 cut(s)	191, 201, 407, 669, 786, 800
Tru9I	TTAA	6 cut(s)	191, 201, 407, 669, 786, 800
TscAI	CASTG	2 cut(s)	120, 191
TseFI	GTSAC	2 cut(s)	441, 646
Tsp45I	GTSAC	2 cut(s)	441, 646
TspDTI	ATGAA	6 cut(s)	17, 192, 195, 304, 360, 714
TspRI	CASTG	2 cut(s)	120, 191
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XspI	CTAG	2 cut(s)	606, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.