Rroxscaffold_6G00410300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002880
Physical Location & Seq
Reverse (-)
32736368 .. 32737489
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410300.1

Sequence Viewer

Length: 1122 bp
ATGGCTTCAGAGTCCCATGATCAGCTTCACTTTGTGTTGATACCACTAATGTCTCCAGGCCACCTTCTACCAATGGCAGACATGGCTAAGCTTTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCTCTCAATGCTGTTGGAATCAAACCTGTCATTGATCGTGCCATTGATTCCGGTCTCTCCCTTCATCTAGTCCAGTTCAATTTGCCACTTGCTGAGTGTGGTTTGCCAGATGGATGTGAAAACTTGGAATCAGTCCCTGCAAGAAACTTGTTTTGTAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGATATTGCTTGATACACTGAAACCCCATTCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGAGATTGCTGAAAAGTCTGGGTTACCAAGGTATTGGTTTGGTGGGACTAGTTGCTTTACTCTCTTGTCTAACCATAATATAGAAACATCCGAGGTCCTAGAGAGTGTTTCAGGATCAGAAACATTTCTGGTGCCTGGTTTGCCTGATGAGATTGAGCTTACTTTAGCCCAATTACCGGCGCACTTGAATCCTGCTAATGTTGACTTCAGAGATTTCCACGGAAAAGTAGAGGAAGCTACAAAAGGATCATGTGGAGTTGTTGTGAATAGCTTTGAGCAGTTGGAAGCAGAGTATGTCAAAGAGTATAGAAAGGTTAGTAACGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAACACAAATTTGGACAAAGCTCAAAGAGGCAACAAGGCCTCCATTGATCAACACCAGTGCTTGAGATGGCTCGATTCATGGCCTGAGAGCTCAGTTGCATATGTATGTCTCGGAAGCCTCGGCCGCGTCGCAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTTGTTTGGGTGATCCGCAGAAAGAAAACAGAAGAATGGGCAAAATGGTTGTTGGAAGATGGATTTGAGGACCGGATTACAGGTAGAGGACTATTAATCCATGGTTGGGCACCACAAGTAATGATATTGTCACATCCTGCAGTTGGTGGGTTTTTAACACATTGTGGTTGGAATTCGACGTTGTGA

Protein Analysis

373

Amino Acids

41.12

Weight (kDa)

5.51

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 241 - 371 2.6e-08 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 529, 1045
AccII CGCG 1 cut(s) 879
AciI CCGC 2 cut(s) 877, 952
AclWI GGATC 3 cut(s) 520, 652, 943
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 2 cut(s) 760, 1108
AcuI CTGAAG 2 cut(s) 299, 589
AdeI CACNNNGTG 2 cut(s) 34, 1100
AfiI CCNNNNNNNGG 3 cut(s) 574, 1042, 1079
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 2 cut(s) 211, 586
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 2 cut(s) 55, 532
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 3 cut(s) 57, 191, 866
AlwI GGATC 3 cut(s) 520, 652, 943
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 5 cut(s) 58, 789, 833, 874, 932
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 760, 1108
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 493, 734, 1006
AsuHPI GGTGA 2 cut(s) 118, 958
AvaII GGWCC 3 cut(s) 493, 734, 1006
BaeGI GKGCMC 1 cut(s) 1048
BanI GGYRCC 2 cut(s) 529, 1045
BanII GRGCYC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 1 cut(s) 350
BccI CCATC 3 cut(s) 236, 813, 989
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 2 cut(s) 57, 534
BclI TGATCA 2 cut(s) 19, 799
BcoDI GTCTC 3 cut(s) 57, 191, 866
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 3 cut(s) 200, 447, 497
BfmI CTRYAG 1 cut(s) 1074
BisI GCNGC 2 cut(s) 364, 877
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 365, 878
Bme1390I CCNGG 2 cut(s) 57, 534
Bme18I GGWCC 3 cut(s) 493, 734, 1006
BmgT120I GGNCC 3 cut(s) 493, 734, 1006
BmiI GGNNCC 2 cut(s) 531, 1047
BmrFI CCNGG 2 cut(s) 57, 534
BmsI GCATC 2 cut(s) 289, 932
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 835
BsaBI GATNNNNATC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 389, 425, 489, 616, 871, 1036
BsaWI WCCGGW 2 cut(s) 182, 1008
BsaXI ACNNNNNCTCC 6 cut(s) 645, 675, 718, 748, 776, 806
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 1042, 1079
Bse118I RCCGGY 2 cut(s) 574, 930
Bse1I ACTGG 4 cut(s) 205, 323, 737, 808
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 57, 534
BseDI CCNNGG 6 cut(s) 389, 425, 489, 616, 871, 1036
BseGI GGATG 3 cut(s) 251, 485, 1069
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 574, 1042, 1079
BseMII CTCAG 6 cut(s) 216, 387, 390, 828, 858, 905
BseNI ACTGG 4 cut(s) 205, 323, 737, 808
BseRI GAGGAG 1 cut(s) 879
BseSI GKGCMC 1 cut(s) 1048
BseX3I CGGCCG 1 cut(s) 874
BseXI GCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 877
BshFI GGCC 5 cut(s) 60, 791, 835, 876, 934
BshNI GGYRCC 2 cut(s) 529, 1045
BsiEI CGRYCG 1 cut(s) 877
BsiHKAI GWGCWC 1 cut(s) 845
BsiSI CCGG 4 cut(s) 183, 575, 931, 1009
BslFI GGGAC 2 cut(s) 251, 457
BslI CCNNNNNNNGG 3 cut(s) 574, 1042, 1079
BsmAI GTCTC 3 cut(s) 57, 191, 866
BsmFI GGGAC 2 cut(s) 251, 457
BsnI GGCC 5 cut(s) 60, 791, 835, 876, 934
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 845, 1048
Bsp143I GATC 6 cut(s) 19, 166, 512, 644, 799, 948
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 1036
BspACI CCGC 2 cut(s) 877, 952
BspANI GGCC 5 cut(s) 60, 791, 835, 876, 934
BspCNI CTCAG 6 cut(s) 217, 386, 391, 829, 857, 904
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 531, 1047
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 3 cut(s) 520, 652, 943
BspT107I GGYRCC 2 cut(s) 529, 1045
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 574, 930
BsrI ACTGG 4 cut(s) 205, 323, 737, 808
BssAI RCCGGY 2 cut(s) 574, 930
BssECI CCNNGG 6 cut(s) 389, 425, 489, 616, 871, 1036
BssMI GATC 6 cut(s) 19, 166, 512, 644, 799, 948
BssT1I CCWWGG 2 cut(s) 425, 1036
Bst2UI CCWGG 2 cut(s) 57, 534
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 8 cut(s) 87, 225, 373, 399, 837, 844, 891, 916
BstDSI CCRYGG 3 cut(s) 389, 616, 1036
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 3 cut(s) 251, 485, 1069
BstFNI CGCG 1 cut(s) 879
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 6 cut(s) 22, 169, 515, 647, 802, 951
BstMAI GTCTC 3 cut(s) 57, 191, 866
BstMBI GATC 6 cut(s) 19, 166, 512, 644, 799, 948
BstMCI CGRYCG 1 cut(s) 877
BstMWI GCNNNNNNNGC 5 cut(s) 83, 319, 404, 538, 876
BstNI CCWGG 2 cut(s) 57, 534
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 55, 532
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 432
BstZI CGGCCG 1 cut(s) 874
BsuRI GGCC 5 cut(s) 60, 791, 835, 876, 934
BtgI CCRYGG 3 cut(s) 389, 616, 1036
BtsCI GGATG 3 cut(s) 251, 485, 1069
BtsIMutI CAGTG 3 cut(s) 344, 744, 815
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 2 cut(s) 574, 930
Cfr13I GGNCC 3 cut(s) 493, 734, 1006
CseI GACGC 1 cut(s) 868
CviAII CATG 6 cut(s) 17, 82, 104, 648, 831, 1037
DdeI CTNAG 8 cut(s) 87, 225, 373, 399, 837, 844, 891, 916
DpnI GATC 6 cut(s) 21, 168, 514, 646, 801, 950
DpnII GATC 6 cut(s) 19, 166, 512, 644, 799, 948
DraIII CACNNNGTG 2 cut(s) 34, 1100
EaeI YGGCCR 1 cut(s) 874
EagI CGGCCG 1 cut(s) 874
Ecl136II GAGCTC 1 cut(s) 843
EclXI CGGCCG 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 425, 1036
Eco147I AGGCCT 1 cut(s) 791
Eco24I GRGCYC 1 cut(s) 845
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 493, 734, 1006
Eco52I CGGCCG 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 843
Eco57I CTGAAG 2 cut(s) 299, 589
Eco91I GGTNACC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 55, 532
EcoT14I CCWWGG 2 cut(s) 425, 1036
EcoT38I GRGCYC 1 cut(s) 845
ErhI CCWWGG 2 cut(s) 425, 1036
FaeI CATG 6 cut(s) 20, 85, 107, 651, 834, 1040
FaqI GGGAC 2 cut(s) 251, 457
FatI CATG 6 cut(s) 16, 81, 103, 647, 830, 1036
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 2 cut(s) 19, 799
Fnu4HI GCNGC 2 cut(s) 364, 877
FokI GGATG 3 cut(s) 258, 472, 1056
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 2 cut(s) 364, 877
FspBI CTAG 3 cut(s) 200, 447, 497
GlaI GCGC 1 cut(s) 579
GluI GCNGC 2 cut(s) 364, 877
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 5 cut(s) 60, 791, 835, 876, 934
HapII CCGG 4 cut(s) 183, 575, 931, 1009
HgaI GACGC 1 cut(s) 868
HhaI GCGC 1 cut(s) 580
Hin1II CATG 6 cut(s) 20, 85, 107, 651, 834, 1040
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 6 cut(s) 11, 150, 179, 260, 586, 827
HpaII CCGG 4 cut(s) 183, 575, 931, 1009
HphI GGTGA 2 cut(s) 118, 958
Hpy166II GTNNAC 2 cut(s) 393, 601
Hpy188I TCNGA 7 cut(s) 10, 318, 376, 490, 517, 608, 866
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 2 cut(s) 393, 601
Hpy99I CGWCG 2 cut(s) 884, 1117
HpyAV CCTTC 2 cut(s) 74, 203
HpyCH4IV ACGT 2 cut(s) 720, 1115
HpyCH4V TGCA 5 cut(s) 272, 302, 366, 851, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 319, 404, 538, 876
HpyF3I CTNAG 8 cut(s) 87, 225, 373, 399, 837, 844, 891, 916
HpySE526I ACGT 2 cut(s) 720, 1115
Hsp92II CATG 6 cut(s) 20, 85, 107, 651, 834, 1040
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 2 cut(s) 19, 799
Kzo9I GATC 6 cut(s) 19, 166, 512, 644, 799, 948
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 2 cut(s) 289, 932
MaeI CTAG 3 cut(s) 200, 447, 497
MaeII ACGT 2 cut(s) 720, 1115
MaeIII GTNAC 5 cut(s) 115, 420, 716, 741, 1065
MalI GATC 6 cut(s) 21, 168, 514, 646, 801, 950
MboI GATC 6 cut(s) 19, 166, 512, 644, 799, 948
MboII GAAGA 2 cut(s) 980, 1004
MhlI GDGCHC 2 cut(s) 845, 1048
MluCI AATT 6 cut(s) 120, 211, 289, 569, 760, 1108
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 5 cut(s) 127, 660, 774, 969, 1085
MnlI CCTC 9 cut(s) 144, 484, 622, 773, 802, 881, 900, 997, 1016
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 2 cut(s) 1031, 1091
MslI CAYNNNNRTG 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 4 cut(s) 183, 575, 931, 1009
MspR9I CCNGG 2 cut(s) 57, 534
MvaI CCWGG 2 cut(s) 57, 534
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 83, 319, 404, 538, 876
NcoI CCATGG 1 cut(s) 1036
NdeI CATATG 1 cut(s) 853
NdeII GATC 6 cut(s) 19, 166, 512, 644, 799, 948
NlaIII CATG 6 cut(s) 20, 85, 107, 651, 834, 1040
NlaIV GGNNCC 2 cut(s) 531, 1047
NmeAIII GCCGAG 1 cut(s) 852
NmuCI GTSAC 3 cut(s) 115, 741, 1065
PceI AGGCCT 1 cut(s) 791
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 150, 179, 260, 586, 827
PkrI GCNGC 2 cut(s) 365, 878
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 845
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 55, 532
PspEI GGTNACC 1 cut(s) 420
PspGI CCWGG 2 cut(s) 55, 532
PspN4I GGNNCC 2 cut(s) 531, 1047
PspPI GGNCC 3 cut(s) 493, 734, 1006
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 1078
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 1031, 1091
SatI GCNGC 2 cut(s) 364, 877
Sau3AI GATC 6 cut(s) 19, 166, 512, 644, 799, 948
Sau96I GGNCC 3 cut(s) 493, 734, 1006
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 57, 534
SduI GDGCHC 2 cut(s) 845, 1048
SfaNI GCATC 2 cut(s) 289, 932
SfcI CTRYAG 1 cut(s) 1074
SinI GGWCC 3 cut(s) 493, 734, 1006
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 6 cut(s) 120, 211, 289, 569, 760, 1108
SseBI AGGCCT 1 cut(s) 791
SsiI CCGC 2 cut(s) 877, 952
SspMI CTAG 3 cut(s) 200, 447, 497
SstI GAGCTC 1 cut(s) 845
StuI AGGCCT 1 cut(s) 791
StyD4I CCNGG 2 cut(s) 55, 532
StyI CCWWGG 2 cut(s) 425, 1036
TaiI ACGT 2 cut(s) 723, 1118
TaqI TCGA 3 cut(s) 359, 825, 1112
TasI AATT 6 cut(s) 120, 211, 289, 569, 760, 1108
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 5 cut(s) 150, 179, 260, 586, 827
Tru1I TTAA 2 cut(s) 1031, 1091
Tru9I TTAA 2 cut(s) 1031, 1091
TscAI CASTG 3 cut(s) 351, 744, 815
TseFI GTSAC 3 cut(s) 115, 741, 1065
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 3 cut(s) 115, 741, 1065
TspDTI ATGAA 2 cut(s) 185, 819
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 3 cut(s) 351, 744, 815
VpaK11BI GGWCC 3 cut(s) 493, 734, 1006
VspI ATTAAT 1 cut(s) 1031
XapI RAATTY 2 cut(s) 760, 1108
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 3 cut(s) 200, 447, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.