Rw3G015520

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002880
Physical Location & Seq
Forward (+)
16036465 .. 16037775
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015520.1

Sequence Viewer

Length: 1311 bp
ATGTCTCCAGGCCACCTTCTACCAATGGCAGACATGGCTAAGCTATTGGCACAGCATGGTATGGTGGTCACAATTATCACCACACCTCTCAATGCTGTTGGAATCAAACCTGTCATTGATCGTGCCATTGATTCCGGTCTCTCCCTTCATCTAGTCCAGTTCATTTTGCCACTTGCTGAGTGTGGTTTGCCAGATGGATGTGAAAACTTGGAATCAGTCCCTGCAAGAAACTTGTTTTGTAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGAAATTGCTTGGGACACTGAAACCCCATCCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGAGATTGCTCAAAAGTTTGGGTTACCAAGGTATTGGTTTGATGGGACTAGTTGCTTTACTCTCTTGGCTAACCATAATATAGAAACATCCAAGGTCCTAGAGAGTGTTTCAGGATCAGAATCATTTATGGTGCCTGGTTTGCCTGATGAGATTGAACTTACTTTAGGCCAATTACCGGCGCACTTGAATCCTGCTAATTTTGACTTCAGAGATTTCCACAGAAAAGTAGAGGAAGCTACAAAAGGATCATGTGGAGTTGTTGTGAATAGATTTAAGCAGTTGGAAACAGAGTATGTCAAAGAGTATGGAAAGGTTAGTAACGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAACACAAACTTGGACAAAGCTCAAAGAGGCAAGTCAGGCAACAAGGCCTCCATTGATCAACACCAGTGCTTGAGATGGCTCGATTCATGGCCTGAGAGCTCGGTTGTCTATGTATGTCTCGGAAGCCTCGGCCGTGTCGAAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTTGTTTGGGTGATCCGCAGAAAGAAGACAGAAGAATGGGCAAAATGGTTGTTGGAAGATGGATTTGAGGACCGGATTAAAGGTAGAGGACTATTAATCCATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGGTTTTTAACACATTGTGGTTGGAATTCGACGTTGGAAGGGATTTGTGCTGGGATTCCAATGATCACATTTCCTATGTTTGCTGAGCAGTTCTACAATGAGAAGTTCATAGTGCATGTCTTGAAGATTGGTGTGAGAGTTGGTGCCTCAGTGGTCATTCCGTTGGGAAAACAAGAAGGGTCTGTGGTGTCAGTGAAAAGCGGCGAGTTTAAGGAGGCTATAGAGAAAGTGATGATCACTGAAGGGAATAAAGAAGGAGAAGAATGA

Protein Analysis

436

Amino Acids

48.15

Weight (kDa)

6.14

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 260 - 388 1.2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 481, 1006, 1187
AciI CCGC 2 cut(s) 913, 1245
AclWI GGATC 3 cut(s) 472, 604, 904
AcoI YGGCCR 1 cut(s) 835
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 3 cut(s) 251, 541, 1305
AdeI CACNNNGTG 1 cut(s) 1061
AfiI CCNNNNNNNGG 3 cut(s) 526, 1003, 1040
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 3 cut(s) 506, 538, 1168
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 7, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AluBI AGCT 7 cut(s) 43, 315, 350, 587, 725, 804, 865
AluI AGCT 7 cut(s) 43, 315, 350, 587, 725, 804, 865
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 3 cut(s) 9, 143, 827
AlwI GGATC 3 cut(s) 472, 604, 904
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 6 cut(s) 10, 517, 750, 794, 835, 893
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 1069
AseI ATTAAT 1 cut(s) 992
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 3 cut(s) 445, 686, 967
AsuHPI GGTGA 2 cut(s) 70, 919
AvaII GGWCC 3 cut(s) 445, 686, 967
BaeGI GKGCMC 1 cut(s) 1009
BanI GGYRCC 3 cut(s) 481, 1006, 1187
BanII GRGCYC 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 1 cut(s) 302
BccI CCATC 5 cut(s) 188, 315, 386, 774, 950
BceAI ACGGC 2 cut(s) 325, 822
BciT130I CCWGG 2 cut(s) 9, 486
BclI TGATCA 3 cut(s) 760, 1107, 1278
BcoDI GTCTC 3 cut(s) 9, 143, 827
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 3 cut(s) 152, 399, 449
BfmI CTRYAG 2 cut(s) 1035, 1263
BisI GCNGC 2 cut(s) 316, 1246
BlpI GCTNAGC 2 cut(s) 39, 1128
BlsI GCNGC 2 cut(s) 317, 1247
Bme1390I CCNGG 2 cut(s) 9, 486
Bme18I GGWCC 3 cut(s) 445, 686, 967
BmgT120I GGNCC 3 cut(s) 445, 686, 967
BmiI GGNNCC 3 cut(s) 483, 1008, 1189
BmrFI CCNGG 2 cut(s) 9, 486
BmsI GCATC 2 cut(s) 241, 893
BpiI GAAGAC 1 cut(s) 929
Bpu1102I GCTNAGC 2 cut(s) 39, 1128
BpuEI CTTGAG 1 cut(s) 796
BsaBI GATNNNNATC 2 cut(s) 333, 469
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 5 cut(s) 341, 377, 441, 832, 997
BsaWI WCCGGW 2 cut(s) 134, 969
BsaXI ACNNNNNCTCC 6 cut(s) 597, 627, 670, 700, 737, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 526, 1003, 1040
Bse118I RCCGGY 2 cut(s) 526, 891
Bse1I ACTGG 4 cut(s) 157, 275, 689, 769
Bse8I GATNNNNATC 2 cut(s) 333, 469
BseBI CCWGG 2 cut(s) 9, 486
BseDI CCNNGG 5 cut(s) 341, 377, 441, 832, 997
BseGI GGATG 4 cut(s) 203, 307, 437, 1030
BseJI GATNNNNATC 2 cut(s) 333, 469
BseLI CCNNNNNNNGG 3 cut(s) 526, 1003, 1040
BseMII CTCAG 7 cut(s) 168, 339, 342, 789, 866, 1119, 1206
BseNI ACTGG 4 cut(s) 157, 275, 689, 769
BseRI GAGGAG 1 cut(s) 840
BseSI GKGCMC 1 cut(s) 1009
BseX3I CGGCCG 1 cut(s) 835
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 1094
Bsh1285I CGRYCG 1 cut(s) 838
BshFI GGCC 6 cut(s) 12, 519, 752, 796, 837, 895
BshNI GGYRCC 3 cut(s) 481, 1006, 1187
BsiEI CGRYCG 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 806
BsiSI CCGG 4 cut(s) 135, 527, 892, 970
BslFI GGGAC 3 cut(s) 203, 307, 409
BslI CCNNNNNNNGG 3 cut(s) 526, 1003, 1040
BsmAI GTCTC 3 cut(s) 9, 143, 827
BsmFI GGGAC 3 cut(s) 203, 307, 409
BsnI GGCC 6 cut(s) 12, 519, 752, 796, 837, 895
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 806, 1009
Bsp143I GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
Bsp1720I GCTNAGC 2 cut(s) 39, 1128
Bsp19I CCATGG 1 cut(s) 997
BspACI CCGC 2 cut(s) 913, 1245
BspANI GGCC 6 cut(s) 12, 519, 752, 796, 837, 895
BspCNI CTCAG 7 cut(s) 169, 338, 343, 790, 865, 1120, 1205
BspLI GGNNCC 3 cut(s) 483, 1008, 1189
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 3 cut(s) 472, 604, 904
BspT107I GGYRCC 3 cut(s) 481, 1006, 1187
BspTNI GGTCTC 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 526, 891
BsrI ACTGG 4 cut(s) 157, 275, 689, 769
BssAI RCCGGY 2 cut(s) 526, 891
BssECI CCNNGG 5 cut(s) 341, 377, 441, 832, 997
BssMI GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
BssT1I CCWWGG 3 cut(s) 377, 441, 997
Bst2UI CCWGG 2 cut(s) 9, 486
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 9 cut(s) 39, 177, 325, 351, 798, 852, 877, 1128, 1192
BstDSI CCRYGG 2 cut(s) 341, 997
BstEII GGTNACC 1 cut(s) 372
BstF5I GGATG 4 cut(s) 203, 307, 437, 1030
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 7 cut(s) 121, 467, 599, 763, 912, 1110, 1281
BstMAI GTCTC 3 cut(s) 9, 143, 827
BstMBI GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
BstMCI CGRYCG 1 cut(s) 838
BstMWI GCNNNNNNNGC 5 cut(s) 35, 271, 356, 490, 741
BstNI CCWGG 2 cut(s) 9, 486
BstNSI RCATGY 1 cut(s) 1163
BstPI GGTNACC 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 7, 484
BstSFI CTRYAG 2 cut(s) 1035, 1263
BstSLI GKGCMC 1 cut(s) 1009
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 929
BstXI CCANNNNNNTGG 1 cut(s) 384
BstZI CGGCCG 1 cut(s) 835
BsuRI GGCC 6 cut(s) 12, 519, 752, 796, 837, 895
BtgI CCRYGG 2 cut(s) 341, 997
BtsCI GGATG 4 cut(s) 203, 307, 437, 1030
BtsIMutI CAGTG 6 cut(s) 296, 696, 776, 1200, 1242, 1281
Cac8I GCNNGC 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 2 cut(s) 526, 891
Cfr13I GGNCC 3 cut(s) 445, 686, 967
CspCI CAANNNNNGTGG 2 cut(s) 999, 1034
CviAII CATG 6 cut(s) 34, 56, 600, 792, 998, 1160
DdeI CTNAG 9 cut(s) 39, 177, 325, 351, 798, 852, 877, 1128, 1192
DpnI GATC 7 cut(s) 120, 466, 598, 762, 911, 1109, 1280
DpnII GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
DraIII CACNNNGTG 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 835
EagI CGGCCG 1 cut(s) 835
Ecl136II GAGCTC 1 cut(s) 804
EclXI CGGCCG 1 cut(s) 835
Eco130I CCWWGG 3 cut(s) 377, 441, 997
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 806
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 445, 686, 967
Eco52I CGGCCG 1 cut(s) 835
Eco53kI GAGCTC 1 cut(s) 804
Eco57I CTGAAG 3 cut(s) 251, 541, 1305
Eco91I GGTNACC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 7, 484
EcoT14I CCWWGG 3 cut(s) 377, 441, 997
EcoT38I GRGCYC 1 cut(s) 806
ErhI CCWWGG 3 cut(s) 377, 441, 997
FaeI CATG 6 cut(s) 37, 59, 603, 795, 1001, 1163
FaqI GGGAC 3 cut(s) 203, 307, 409
FatI CATG 6 cut(s) 33, 55, 599, 791, 997, 1159
FbaI TGATCA 3 cut(s) 760, 1107, 1278
Fnu4HI GCNGC 2 cut(s) 316, 1246
FokI GGATG 4 cut(s) 210, 294, 424, 1017
FriOI GRGCYC 1 cut(s) 806
Fsp4HI GCNGC 2 cut(s) 316, 1246
FspBI CTAG 3 cut(s) 152, 399, 449
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 316, 1246
GsaI CCCAGC 1 cut(s) 1098
HaeIII GGCC 6 cut(s) 12, 519, 752, 796, 837, 895
HapII CCGG 4 cut(s) 135, 527, 892, 970
HhaI GCGC 1 cut(s) 532
Hin1II CATG 6 cut(s) 37, 59, 603, 795, 1001, 1163
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HinfI GANTC 7 cut(s) 102, 131, 212, 470, 538, 788, 1099
HpaII CCGG 4 cut(s) 135, 527, 892, 970
HphI GGTGA 2 cut(s) 70, 919
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 6 cut(s) 270, 312, 328, 469, 560, 827
Hpy188III TCNNGA 2 cut(s) 462, 1165
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 1 cut(s) 1078
HpyAV CCTTC 6 cut(s) 26, 155, 1076, 1214, 1280, 1292
HpyCH4IV ACGT 2 cut(s) 672, 1076
HpyCH4V TGCA 5 cut(s) 224, 254, 318, 1037, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 271, 356, 490, 741
HpyF3I CTNAG 9 cut(s) 39, 177, 325, 351, 798, 852, 877, 1128, 1192
HpySE526I ACGT 2 cut(s) 672, 1076
Hsp92II CATG 6 cut(s) 37, 59, 603, 795, 1001, 1163
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 3 cut(s) 760, 1107, 1278
Kzo9I GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 2 cut(s) 241, 893
MaeI CTAG 3 cut(s) 152, 399, 449
MaeII ACGT 2 cut(s) 672, 1076
MaeIII GTNAC 5 cut(s) 67, 372, 668, 693, 1026
MalI GATC 7 cut(s) 120, 466, 598, 762, 911, 1109, 1280
MboI GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
MboII GAAGA 4 cut(s) 934, 941, 965, 1180
MhlI GDGCHC 2 cut(s) 806, 1009
MluCI AATT 6 cut(s) 72, 241, 284, 521, 547, 1069
MmeI TCCRAC 6 cut(s) 79, 612, 726, 930, 1046, 1059
MseI TTAA 5 cut(s) 624, 975, 992, 1052, 1254
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 4 cut(s) 135, 527, 892, 970
MspR9I CCNGG 2 cut(s) 9, 486
MvaI CCWGG 2 cut(s) 9, 486
MwoI GCNNNNNNNGC 5 cut(s) 35, 271, 356, 490, 741
NcoI CCATGG 1 cut(s) 997
NdeII GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
NlaIII CATG 6 cut(s) 37, 59, 603, 795, 1001, 1163
NlaIV GGNNCC 3 cut(s) 483, 1008, 1189
NmeAIII GCCGAG 1 cut(s) 813
NmuCI GTSAC 3 cut(s) 67, 693, 1026
NspI RCATGY 1 cut(s) 1163
PceI AGGCCT 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PfeI GAWTC 7 cut(s) 102, 131, 212, 470, 538, 788, 1099
PkrI GCNGC 2 cut(s) 317, 1247
PpuMI RGGWCCY 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 7, 484
PspEI GGTNACC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 1094
PspGI CCWGG 2 cut(s) 7, 484
PspN4I GGNNCC 3 cut(s) 483, 1008, 1189
PspPI GGNCC 3 cut(s) 445, 686, 967
PspPPI RGGWCCY 1 cut(s) 445
PstI CTGCAG 1 cut(s) 1039
PstNI CAGNNNCTG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 350
SacI GAGCTC 1 cut(s) 806
SaqAI TTAA 5 cut(s) 624, 975, 992, 1052, 1254
SatI GCNGC 2 cut(s) 316, 1246
Sau3AI GATC 7 cut(s) 118, 464, 596, 760, 909, 1107, 1278
Sau96I GGNCC 3 cut(s) 445, 686, 967
ScrFI CCNGG 2 cut(s) 9, 486
SduI GDGCHC 2 cut(s) 806, 1009
SfaNI GCATC 2 cut(s) 241, 893
SfcI CTRYAG 2 cut(s) 1035, 1263
SinI GGWCC 3 cut(s) 445, 686, 967
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 6 cut(s) 72, 241, 284, 521, 547, 1069
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 2 cut(s) 913, 1245
SspMI CTAG 3 cut(s) 152, 399, 449
SstI GAGCTC 1 cut(s) 806
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 2 cut(s) 7, 484
StyI CCWWGG 3 cut(s) 377, 441, 997
TaiI ACGT 2 cut(s) 675, 1079
TaqI TCGA 3 cut(s) 786, 843, 1073
TasI AATT 6 cut(s) 72, 241, 284, 521, 547, 1069
TauI GCSGC 1 cut(s) 1248
TfiI GAWTC 7 cut(s) 102, 131, 212, 470, 538, 788, 1099
Tru1I TTAA 5 cut(s) 624, 975, 992, 1052, 1254
Tru9I TTAA 5 cut(s) 624, 975, 992, 1052, 1254
TscAI CASTG 6 cut(s) 303, 696, 776, 1200, 1242, 1288
TseFI GTSAC 3 cut(s) 67, 693, 1026
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 3 cut(s) 67, 693, 1026
TspDTI ATGAA 4 cut(s) 137, 151, 780, 1141
TspGWI ACGGA 1 cut(s) 1194
TspRI CASTG 6 cut(s) 303, 696, 776, 1200, 1242, 1288
VpaK11BI GGWCC 3 cut(s) 445, 686, 967
VspI ATTAAT 1 cut(s) 992
XapI RAATTY 1 cut(s) 1069
XceI RCATGY 1 cut(s) 1163
XspI CTAG 3 cut(s) 152, 399, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.