RLG00000024203

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002880
Physical Location & Seq
Reverse (-)
33048928 .. 33050279
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024203

Sequence Viewer

Length: 771 bp
ATGGCTAAGCTATTGGCACAACATGTTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCAAATCAAACCAATCATAGATCGTGCGATTGATTCTGGTCTCCCTATTCATATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGAATGCCTGAAATGGCTTGATTCATGGCCTGAGAGGTCTGTGGTTTATGTATGTCTTGGAAGCCTTAGCCGTGTCACGACTCTTCAATTGATAGAGCTAGGTTTAGGCCTAGAAACTTCAGACTGTCCTTTTGTTTGGGTGATAAGCAGAAACAATTCAGAAGAATGGGGAAAATGGTTGTTCGAAGATGGATTTGAGGAGAGGATTAAAGAAAAAGGACTATTAATCTATGGTTGGGCACCACAAGAATTGATATTATCACATTCTTTACTAGGTGGATATCTAACACATGGTGGTTGGAATTCAACATTGGAAGGGATTTGTGCTGGGACTCCTATGATCGCAAGGCCTATGTTTGCTGAGCAGTTCTACAATGAGAAGTTGATAGTGCAAGTCTTGAAGATTGGTGAGAGAGTTGGGGCTAATATGGGCATTCCATTGGGGAAACAAGAGAGCTCTAGGGTATTGGTGAAGAGTGGTGAGTTTAAAGAGGCCATGGACAACGTGATGAACAAGGAAGGGAACAAAGAAGGAGAAGAGAGAAGAGAGAAGAGAGAAAGCCAGAAAGCTTGCAATGATAGCAAAGAAAGCCACAGAGGAGGGAGGCTCTTCTTTCCTTAA

Protein Analysis

257

Amino Acids

28.87

Weight (kDa)

5.93

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 53 - 181 4.5e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 68, 152, 236, 456, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 4 cut(s) 10, 247, 606, 719
AluI AGCT 4 cut(s) 10, 247, 606, 719
Alw21I GWGCWC 1 cut(s) 608
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 4 cut(s) 176, 256, 497, 642
ApoI RAATTY 1 cut(s) 451
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AseI ATTAAT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 304
AsuHPI GGTGA 4 cut(s) 301, 569, 631, 641
AsuII TTCGAA 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 608
Bbv12I GWGCWC 1 cut(s) 608
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 4 cut(s) 248, 260, 422, 609
BlpI GCTNAGC 2 cut(s) 6, 510
BmiI GGNNCC 1 cut(s) 390
BplI GAGNNNNNCTC 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 2 cut(s) 6, 510
Bpu14I TTCGAA 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 645
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 171, 501
BseRI GAGGAG 2 cut(s) 362, 762
BseSI GKGCMC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 4 cut(s) 178, 258, 499, 644
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 608
BslFI GGGAC 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 2 cut(s) 158, 582
BsnI GGCC 4 cut(s) 178, 258, 499, 644
Bso31I GGTCTC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 391, 608
Bsp143I GATC 2 cut(s) 85, 489
Bsp1720I GCTNAGC 2 cut(s) 6, 510
Bsp19I CCATGG 1 cut(s) 645
BspANI GGCC 4 cut(s) 178, 258, 499, 644
BspCNI CTCAG 2 cut(s) 172, 502
BspLI GGNNCC 1 cut(s) 390
BspQI GCTCTTC 1 cut(s) 764
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 2 cut(s) 85, 489
BssT1I CCWWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 6 cut(s) 237, 617, 681, 688, 695, 764
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 4 cut(s) 6, 180, 215, 510
BstDSI CCRYGG 1 cut(s) 645
BstKTI GATC 2 cut(s) 88, 492
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 85, 489
BstMWI GCNNNNNNNGC 2 cut(s) 729, 738
BstNSI RCATGY 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 391
BsuRI GGCC 4 cut(s) 178, 258, 499, 644
BtgI CCRYGG 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 721
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 5 cut(s) 23, 143, 174, 440, 646
DdeI CTNAG 4 cut(s) 6, 180, 215, 510
DpnI GATC 2 cut(s) 87, 491
DpnII GATC 2 cut(s) 85, 489
DraI TTTAAA 1 cut(s) 637
DraIII CACNNNGTG 1 cut(s) 443
Eam1104I CTCTTC 6 cut(s) 237, 617, 681, 688, 695, 764
EarI CTCTTC 6 cut(s) 237, 617, 681, 688, 695, 764
Ecl136II GAGCTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 645
Eco147I AGGCCT 2 cut(s) 258, 499
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 606
EcoRI GAATTC 1 cut(s) 451
EcoRV GATATC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 645
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 5 cut(s) 26, 146, 177, 443, 649
FaqI GGGAC 1 cut(s) 493
FatI CATG 5 cut(s) 22, 142, 173, 439, 645
FauNDI CATATG 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 608
FspBI CTAG 4 cut(s) 248, 260, 422, 609
GsaI CCCAGC 1 cut(s) 480
HaeIII GGCC 4 cut(s) 178, 258, 499, 644
Hin1II CATG 5 cut(s) 26, 146, 177, 443, 649
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 4 cut(s) 98, 170, 229, 481
HphI GGTGA 4 cut(s) 301, 569, 631, 641
Hpy188I TCNGA 2 cut(s) 271, 310
Hpy188III TCNNGA 2 cut(s) 226, 547
HpyAV CCTTC 3 cut(s) 458, 662, 674
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 3 cut(s) 124, 541, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 729, 738
HpyF3I CTNAG 4 cut(s) 6, 180, 215, 510
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 5 cut(s) 26, 146, 177, 443, 649
Kzo9I GATC 2 cut(s) 85, 489
LguI GCTCTTC 1 cut(s) 764
LpnPI CCDG 5 cut(s) 87, 170, 192, 462, 725
MaeI CTAG 4 cut(s) 248, 260, 422, 609
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 3 cut(s) 34, 43, 223
MalI GATC 2 cut(s) 87, 491
MboI GATC 2 cut(s) 85, 489
MboII GAAGA 9 cut(s) 224, 323, 347, 562, 634, 698, 705, 712, 751
MfeI CAATTG 2 cut(s) 39, 236
MhlI GDGCHC 2 cut(s) 391, 608
MluCI AATT 5 cut(s) 39, 236, 304, 398, 451
MlyI GAGTC 2 cut(s) 223, 475
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 7 cut(s) 177, 340, 345, 634, 740, 743, 747
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 5 cut(s) 57, 357, 374, 636, 769
MunI CAATTG 2 cut(s) 39, 236
Mva1269I GAATGC 2 cut(s) 158, 582
MwoI GCNNNNNNNGC 2 cut(s) 729, 738
NcoI CCATGG 1 cut(s) 645
NdeI CATATG 1 cut(s) 117
NdeII GATC 2 cut(s) 85, 489
NlaIII CATG 5 cut(s) 26, 146, 177, 443, 649
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 34, 223
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 1 cut(s) 333
PceI AGGCCT 2 cut(s) 258, 499
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 764
PctI GAATGC 2 cut(s) 158, 582
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 98, 170
PleI GAGTC 2 cut(s) 223, 475
PpsI GAGTC 2 cut(s) 223, 475
PscI ACATGT 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 608
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 390
SacI GAGCTC 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 5 cut(s) 57, 357, 374, 636, 769
Sau3AI GATC 2 cut(s) 85, 489
SchI GAGTC 2 cut(s) 223, 475
SduI GDGCHC 2 cut(s) 391, 608
SetI ASST 8 cut(s) 12, 188, 249, 253, 427, 608, 657, 721
SfuI TTCGAA 1 cut(s) 333
Sse9I AATT 5 cut(s) 39, 236, 304, 398, 451
SseBI AGGCCT 2 cut(s) 258, 499
SspMI CTAG 4 cut(s) 248, 260, 422, 609
SstI GAGCTC 1 cut(s) 608
StuI AGGCCT 2 cut(s) 258, 499
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 657
TaqI TCGA 1 cut(s) 333
TasI AATT 5 cut(s) 39, 236, 304, 398, 451
TfiI GAWTC 2 cut(s) 98, 170
Tru1I TTAA 5 cut(s) 57, 357, 374, 636, 769
Tru9I TTAA 5 cut(s) 57, 357, 374, 636, 769
TseFI GTSAC 2 cut(s) 34, 223
Tsp45I GTSAC 2 cut(s) 34, 223
TspDTI ATGAA 3 cut(s) 104, 162, 674
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 4 cut(s) 248, 260, 422, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.