Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

33232491 .. 33233564

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAATCAGTCCCTACAAGAAACTTGTTTTGGAATTTCTTTGATGCAGTTAGCAGGCTGCAGCAAGCAATAGAACAATTACTTGAGACACTAAAACCTATGCCGAGCTGCATAATCTCAGATAAACATTTTCCATGGACAGGTGAGATTACTCAAAAGTTTGGGATACCAAAGTATTGGTTTGATGGGATTAGTTGTTTTACTCTTTTGTCTAACCATAATATAGAAACATCCAAGGTTCTAGGAAGTGTTTCAGGGTCAGAACCATTTCTGGTGCCTGGTTTACCTGATGAGATTGAGCTTACTTTAGCCCAATTACTGGTGCACTTGAATCCTGCTAAGTGCAACAAGGCTTGCATTGATCAAAACCAGTGCTTGAGATGGCTTGATTCATGGCCTGAGGACTCAGTTGTTTATGTATGTTTTGGAAGCCTTGGGCGTATTGCAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTCATTTGGGTGATCAGCGGGAAGAAAACAGTAGAATGGGCAAAAAGGTTGTTGGGAGATGGATTTGAGGACAGGATTAAAGGTAGAGGCCTTTTAATCCATGGTTGGTCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGGTTTTTAACACATTGTGGTTGGAATTCGACGTTGGAAGGGATTTGTGCTGAGATTCCAATGATCACATTTCCTATGTTTGTTGAGCAGTTCTACAATGAGAAGTTCATAGTGCATGTCTTGAAGATTGGTGTGAGAGTTGGTGCCTCAGTGGTCAATCCGTTGGGAAAACAAGAAGGGTCTGTGGTGTCAGTGAAAAGCGGCGAGTTTAAGGAGGCTATAGAGAAAGTGATGATCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

296

Amino Acids

32.87

Weight (kDa)

6.0

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	124 - 255	7.1e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	274, 788
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	2 cut(s)	516, 846
AcsI	RAATTY	2 cut(s)	34, 670
AdeI	CACNNNGTG	1 cut(s)	662
AfiI	CCNNNNNNNGG	3 cut(s)	140, 319, 641
AgsI	TTSAA	2 cut(s)	331, 769
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	4 cut(s)	13, 45, 662, 694
AluBI	AGCT	3 cut(s)	108, 301, 466
AluI	AGCT	3 cut(s)	108, 301, 466
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	395, 494, 586
ApaLI	GTGCAC	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	58, 61, 108
ApoI	RAATTY	2 cut(s)	34, 670
Asp700I	GAANNNNTTC	2 cut(s)	250, 267
AsuHPI	GGTGA	3 cut(s)	155, 520, 600
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	327
BaeI	ACNNNNGTAYC	2 cut(s)	158, 191
BanI	GGYRCC	2 cut(s)	274, 788
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	45, 73, 95
BccI	CCATC	3 cut(s)	179, 375, 551
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	4 cut(s)	361, 510, 708, 879
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	3 cut(s)	59, 636, 864
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	4 cut(s)	59, 62, 109, 847
BlsI	GCNGC	4 cut(s)	60, 63, 110, 848
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	276, 790
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	34, 494
BpuEI	CTTGAG	2 cut(s)	104, 397
BsaJI	CCNNGG	4 cut(s)	134, 234, 433, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 319, 641
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	324, 370
Bse21I	CCTNAGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	134, 234, 433, 598
BseGI	GGATG	2 cut(s)	230, 631
BseLI	CCNNNNNNNGG	3 cut(s)	140, 319, 641
BseMII	CTCAG	6 cut(s)	132, 390, 420, 467, 687, 807
BseNI	ACTGG	2 cut(s)	324, 370
BseRI	GAGGAG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	45, 73, 95
BshFI	GGCC	3 cut(s)	397, 496, 588
BshNI	GGYRCC	2 cut(s)	274, 788
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	140, 319, 641
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	397, 496, 588
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	361, 510, 708, 879
Bsp19I	CCATGG	2 cut(s)	134, 598
BspACI	CCGC	2 cut(s)	516, 846
BspANI	GGCC	3 cut(s)	397, 496, 588
BspCNI	CTCAG	6 cut(s)	131, 391, 419, 466, 688, 806
BspLI	GGNNCC	2 cut(s)	276, 790
BspMAI	CTGCAG	2 cut(s)	63, 640
BspT107I	GGYRCC	2 cut(s)	274, 788
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	324, 370
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	4 cut(s)	134, 234, 433, 598
BssMI	GATC	4 cut(s)	361, 510, 708, 879
BssT1I	CCWWGG	4 cut(s)	134, 234, 433, 598
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	529
BstC8I	GCNNGC	3 cut(s)	56, 66, 355
BstDEI	CTNAG	8 cut(s)	118, 339, 399, 406, 453, 478, 696, 793
BstDSI	CCRYGG	2 cut(s)	134, 598
BstEII	GGTNACC	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	230, 631
BstKTI	GATC	4 cut(s)	364, 513, 711, 882
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	361, 510, 708, 879
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	764
BstPI	GGTNACC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	3 cut(s)	59, 636, 864
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	45, 73, 95
BstXI	CCANNNNNNTGG	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	397, 496, 588
BtgI	CCRYGG	2 cut(s)	134, 598
BtsCI	GGATG	2 cut(s)	230, 631
BtsIMutI	CAGTG	3 cut(s)	377, 801, 843
Cac8I	GCNNGC	3 cut(s)	56, 66, 355
Cfr10I	RCCGGY	1 cut(s)	492
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	4 cut(s)	135, 393, 599, 761
DdeI	CTNAG	8 cut(s)	118, 339, 399, 406, 453, 478, 696, 793
DpnI	GATC	4 cut(s)	363, 512, 710, 881
DpnII	GATC	4 cut(s)	361, 510, 708, 879
DraIII	CACNNNGTG	1 cut(s)	662
Eco130I	CCWWGG	4 cut(s)	134, 234, 433, 598
Eco147I	AGGCCT	1 cut(s)	588
Eco81I	CCTNAGG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	606
EcoO65I	GGTNACC	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	4 cut(s)	134, 234, 433, 598
ErhI	CCWWGG	4 cut(s)	134, 234, 433, 598
FaeI	CATG	4 cut(s)	138, 396, 602, 764
FatI	CATG	4 cut(s)	134, 392, 598, 760
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	4 cut(s)	361, 510, 708, 879
Fnu4HI	GCNGC	4 cut(s)	59, 62, 109, 847
FokI	GGATG	2 cut(s)	217, 618
Fsp4HI	GCNGC	4 cut(s)	59, 62, 109, 847
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	4 cut(s)	59, 62, 109, 847
HaeIII	GGCC	3 cut(s)	397, 496, 588
HapII	CCGG	1 cut(s)	493
Hin1II	CATG	4 cut(s)	138, 396, 602, 764
HinfI	GANTC	5 cut(s)	5, 331, 389, 404, 700
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	3 cut(s)	155, 520, 600
Hpy166II	GTNNAC	2 cut(s)	284, 325
Hpy188I	TCNGA	2 cut(s)	121, 262
Hpy188III	TCNNGA	1 cut(s)	766
Hpy8I	GTNNAC	2 cut(s)	284, 325
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	677, 815
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	9 cut(s)	47, 61, 111, 325, 345, 357, 446, 638, 760
HpyF3I	CTNAG	8 cut(s)	118, 339, 399, 406, 453, 478, 696, 793
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	4 cut(s)	138, 396, 602, 764
Ksp22I	TGATCA	4 cut(s)	361, 510, 708, 879
Kzo9I	GATC	4 cut(s)	361, 510, 708, 879
Lsp1109I	GCAGC	3 cut(s)	45, 73, 95
LweI	GCATC	2 cut(s)	34, 494
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	606, 627
MalI	GATC	4 cut(s)	363, 512, 710, 881
MboI	GATC	4 cut(s)	361, 510, 708, 879
MboII	GAAGA	2 cut(s)	532, 781
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	4 cut(s)	34, 77, 314, 670
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	647, 660
MnlI	CCTC	6 cut(s)	394, 462, 559, 578, 802, 853
MroXI	GAANNNNTTC	2 cut(s)	250, 267
MseI	TTAA	5 cut(s)	576, 593, 653, 855, 886
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
NcoI	CCATGG	2 cut(s)	134, 598
NdeII	GATC	4 cut(s)	361, 510, 708, 879
NlaIII	CATG	4 cut(s)	138, 396, 602, 764
NlaIV	GGNNCC	2 cut(s)	276, 790
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	606, 627
NspI	RCATGY	1 cut(s)	764
PceI	AGGCCT	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	250, 267
PfeI	GAWTC	4 cut(s)	5, 331, 389, 700
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	60, 63, 110, 848
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	276, 790
PstI	CTGCAG	2 cut(s)	63, 640
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	5 cut(s)	576, 593, 653, 855, 886
SatI	GCNGC	4 cut(s)	59, 62, 109, 847
Sau3AI	GATC	4 cut(s)	361, 510, 708, 879
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	34, 494
SfcI	CTRYAG	3 cut(s)	59, 636, 864
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	83, 376
SmoI	CTYRAG	2 cut(s)	83, 376
Sse9I	AATT	4 cut(s)	34, 77, 314, 670
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	2 cut(s)	516, 846
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	4 cut(s)	134, 234, 433, 598
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	1 cut(s)	674
TasI	AATT	4 cut(s)	34, 77, 314, 670
TauI	GCSGC	1 cut(s)	849
TfiI	GAWTC	4 cut(s)	5, 331, 389, 700
Tru1I	TTAA	5 cut(s)	576, 593, 653, 855, 886
Tru9I	TTAA	5 cut(s)	576, 593, 653, 855, 886
TscAI	CASTG	3 cut(s)	377, 801, 843
TseFI	GTSAC	2 cut(s)	606, 627
TseI	GCWGC	3 cut(s)	58, 61, 108
Tsp45I	GTSAC	2 cut(s)	606, 627
TspDTI	ATGAA	3 cut(s)	381, 490, 742
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	3 cut(s)	377, 801, 843
Van91I	CCANNNNNTGG	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	34, 670
XceI	RCATGY	1 cut(s)	764
XmnI	GAANNNNTTC	2 cut(s)	250, 267
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.