RchiOBHm_Chr3g0471111

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002880
Physical Location & Seq
Forward (+)
16993727 .. 16995886
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43686

Sequence Viewer

Length: 1476 bp
ATGGCTTCAGAGTCCCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCAGGCCACCTTCTACCAATGGCAGACATGGCTAAGCTATTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCTCTCAATGCTGTTGGAATCAAACCTGTCATTGATCGTGCCATTGATTCCGGTCTCTCCCTTCATCTAGTCCAGTTCATTTTGCCACTTGCTGAGTGTGGTTTGCCAGATGGATGTGAAAACTTGGAATCAGTCCCTGCAAGAAACTTGTTTTGTAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGAAATTGCTTGAGACACTGAAACCCCATCCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGAGATTGCTCAAAAGTTTGGGTTACCAAGGTATTGGTTTGATGGGACTAGTTGCTTTACTCTCTTGTCTAACCATAATATAGAAACATCCAAGGTCCTAGAGAGTGTTTCAGGATCAGAATCATTTATGGTGCCTGGTTTGCCTGATGAGATTGAACTTACTTTAGGCCAATTACCGGCGCACTTGAATCCTGCTAATGTTGACTTCAGAGATTTCCACGGAAAAGTAGAGGAAGCTACAAAAGCATCATGTGGAGTTGTTGTGAATAGCTTTGAGCAGTTGGAAACGGAGTATGTCAAAGAGTATAGAAAGGTTAGTAAAGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAACACAAACTTGGACAAAGCTCAAAGAGGCAAGTCAGGCAACAAGGCCTCCATTGATCAACACCAGTGCTTGAGATGGCTCGATTCATGGCCTGAGAGCTCGGTTGTCTATGTATGTCTCGGAAGCCTCGGCCGTGTCGAAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTTGTTTGGGTGATCCGCAGAAAGAAGACAGAAGAATGGGCAAAATGGTTGTTGGAAGATGGATTTGAGGACCGGATTAAAGGTAGAGGACTATTAATCCATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGGTTTTTAACACATTGTGGTTGGAATTCGACGTTGGAAGGGATTTGTGCTGGGATTCCAATGATCACATTTCCTATGTTTGCTGAGCAGTTCTACAATGAGAAGTTCATAGTGCATGTCTTGAAGATTGGTGTGAGAGTTGGTGCCTCAGTGGTCATTCCGTTGGGAAAACAAGAAGGGTCTGTGGTGTCAGTGAAAAGCGGCGAGTTTAAGGAGGCTATAGAGAAAGTGATGATCACTGAAGGGAATAAAGAAGGAGAAGAAAGAAGAGAGAGAGCAAAGAAGCTTGCAGTGATGGCCAAGAAAGCTACAGAGGAGGGAGGTTCTTCTTACCTCAACATTAGACTGTTAATTGAAGATGTAAGATCATACAAACATCAGTAG

Protein Analysis

491

Amino Acids

54.48

Weight (kDa)

6.27

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 276 - 404 1.3e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 529, 1054, 1235
AciI CCGC 2 cut(s) 961, 1293
AclWI GGATC 2 cut(s) 520, 952
AcoI YGGCCR 2 cut(s) 883, 1389
AcsI RAATTY 1 cut(s) 1117
AcuI CTGAAG 3 cut(s) 299, 589, 1353
AdeI CACNNNGTG 1 cut(s) 1109
AfiI CCNNNNNNNGG 3 cut(s) 574, 1051, 1088
AgsI TTSAA 4 cut(s) 554, 586, 1216, 1448
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 2 cut(s) 55, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 4 cut(s) 57, 191, 335, 875
AlwI GGATC 2 cut(s) 520, 952
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 7 cut(s) 58, 565, 798, 842, 883, 941, 1389
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 1117
AseI ATTAAT 1 cut(s) 1040
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 493, 734, 1015
AsuHPI GGTGA 2 cut(s) 118, 967
AvaII GGWCC 3 cut(s) 493, 734, 1015
BaeGI GKGCMC 1 cut(s) 1057
BalI TGGCCA 1 cut(s) 1391
BanI GGYRCC 3 cut(s) 529, 1054, 1235
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 977
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 1 cut(s) 350
BccI CCATC 6 cut(s) 236, 363, 434, 822, 998, 1381
BceAI ACGGC 2 cut(s) 373, 870
BciT130I CCWGG 2 cut(s) 57, 534
BclI TGATCA 4 cut(s) 19, 808, 1155, 1326
BcoDI GTCTC 4 cut(s) 57, 191, 335, 875
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 3 cut(s) 200, 447, 497
BfmI CTRYAG 3 cut(s) 1083, 1311, 1401
BisI GCNGC 2 cut(s) 364, 1294
BlpI GCTNAGC 2 cut(s) 87, 1176
BlsI GCNGC 2 cut(s) 365, 1295
Bme1390I CCNGG 2 cut(s) 57, 534
Bme18I GGWCC 3 cut(s) 493, 734, 1015
BmgT120I GGNCC 3 cut(s) 493, 734, 1015
BmiI GGNNCC 3 cut(s) 531, 1056, 1237
BmrFI CCNGG 2 cut(s) 57, 534
BmsI GCATC 3 cut(s) 289, 653, 941
BpiI GAAGAC 1 cut(s) 977
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 2 cut(s) 87, 1176
BpuEI CTTGAG 2 cut(s) 359, 844
BsaBI GATNNNNATC 2 cut(s) 381, 517
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 389, 425, 489, 616, 880, 1045
BsaWI WCCGGW 2 cut(s) 182, 1017
BsaXI ACNNNNNCTCC 6 cut(s) 645, 675, 718, 748, 785, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 1051, 1088
Bse118I RCCGGY 2 cut(s) 574, 939
Bse1I ACTGG 4 cut(s) 205, 323, 737, 817
Bse8I GATNNNNATC 2 cut(s) 381, 517
BseBI CCWGG 2 cut(s) 57, 534
BseDI CCNNGG 6 cut(s) 389, 425, 489, 616, 880, 1045
BseGI GGATG 4 cut(s) 251, 355, 485, 1078
BseJI GATNNNNATC 2 cut(s) 381, 517
BseLI CCNNNNNNNGG 3 cut(s) 574, 1051, 1088
BseMII CTCAG 7 cut(s) 216, 387, 390, 837, 914, 1167, 1254
BseNI ACTGG 4 cut(s) 205, 323, 737, 817
BseRI GAGGAG 2 cut(s) 888, 1421
BseSI GKGCMC 1 cut(s) 1057
BseX3I CGGCCG 1 cut(s) 883
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 1142
Bsh1285I CGRYCG 1 cut(s) 886
BshFI GGCC 7 cut(s) 60, 567, 800, 844, 885, 943, 1391
BshNI GGYRCC 3 cut(s) 529, 1054, 1235
BsiEI CGRYCG 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 854
BsiSI CCGG 4 cut(s) 183, 575, 940, 1018
BslFI GGGAC 2 cut(s) 251, 457
BslI CCNNNNNNNGG 3 cut(s) 574, 1051, 1088
BsmAI GTCTC 4 cut(s) 57, 191, 335, 875
BsmFI GGGAC 2 cut(s) 251, 457
BsnI GGCC 7 cut(s) 60, 567, 800, 844, 885, 943, 1391
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 854, 1057
Bsp143I GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
Bsp1720I GCTNAGC 2 cut(s) 87, 1176
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 2 cut(s) 961, 1293
BspANI GGCC 7 cut(s) 60, 567, 800, 844, 885, 943, 1391
BspCNI CTCAG 7 cut(s) 217, 386, 391, 838, 913, 1168, 1253
BspLI GGNNCC 3 cut(s) 531, 1056, 1237
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 2 cut(s) 520, 952
BspT107I GGYRCC 3 cut(s) 529, 1054, 1235
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 574, 939
BsrI ACTGG 4 cut(s) 205, 323, 737, 817
BssAI RCCGGY 2 cut(s) 574, 939
BssECI CCNNGG 6 cut(s) 389, 425, 489, 616, 880, 1045
BssMI GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
BssT1I CCWWGG 3 cut(s) 425, 489, 1045
Bst2UI CCWGG 2 cut(s) 57, 534
Bst4CI ACNGT 1 cut(s) 1440
Bst6I CTCTTC 1 cut(s) 1354
BstC8I GCNNGC 2 cut(s) 311, 1380
BstDEI CTNAG 9 cut(s) 87, 225, 373, 399, 846, 900, 925, 1176, 1240
BstDSI CCRYGG 3 cut(s) 389, 616, 1045
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 4 cut(s) 251, 355, 485, 1078
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 8 cut(s) 22, 169, 515, 811, 960, 1158, 1329, 1460
BstMAI GTCTC 4 cut(s) 57, 191, 335, 875
BstMBI GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
BstMCI CGRYCG 1 cut(s) 886
BstMWI GCNNNNNNNGC 8 cut(s) 83, 319, 404, 538, 641, 789, 1388, 1397
BstNI CCWGG 2 cut(s) 57, 534
BstNSI RCATGY 1 cut(s) 1211
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 55, 532
BstSFI CTRYAG 3 cut(s) 1083, 1311, 1401
BstSLI GKGCMC 1 cut(s) 1057
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 977
BstXI CCANNNNNNTGG 1 cut(s) 432
BstZI CGGCCG 1 cut(s) 883
BsuRI GGCC 7 cut(s) 60, 567, 800, 844, 885, 943, 1391
BtgI CCRYGG 3 cut(s) 389, 616, 1045
BtsCI GGATG 4 cut(s) 251, 355, 485, 1078
BtsI GCAGTG 1 cut(s) 1389
BtsIMutI CAGTG 7 cut(s) 344, 744, 824, 1248, 1290, 1329, 1389
Cac8I GCNNGC 2 cut(s) 311, 1380
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 2 cut(s) 574, 939
Cfr13I GGNCC 3 cut(s) 493, 734, 1015
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 7 cut(s) 17, 82, 104, 648, 840, 1046, 1208
DdeI CTNAG 9 cut(s) 87, 225, 373, 399, 846, 900, 925, 1176, 1240
DpnI GATC 8 cut(s) 21, 168, 514, 810, 959, 1157, 1328, 1459
DpnII GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
DraIII CACNNNGTG 1 cut(s) 1109
EaeI YGGCCR 2 cut(s) 883, 1389
EagI CGGCCG 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 1354
EarI CTCTTC 1 cut(s) 1354
Ecl136II GAGCTC 1 cut(s) 852
EclXI CGGCCG 1 cut(s) 883
Eco130I CCWWGG 3 cut(s) 425, 489, 1045
Eco147I AGGCCT 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 493, 734, 1015
Eco52I CGGCCG 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 3 cut(s) 299, 589, 1353
Eco91I GGTNACC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 852
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 2 cut(s) 55, 532
EcoT14I CCWWGG 3 cut(s) 425, 489, 1045
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 3 cut(s) 425, 489, 1045
FaeI CATG 7 cut(s) 20, 85, 107, 651, 843, 1049, 1211
FaqI GGGAC 2 cut(s) 251, 457
FatI CATG 7 cut(s) 16, 81, 103, 647, 839, 1045, 1207
FbaI TGATCA 4 cut(s) 19, 808, 1155, 1326
Fnu4HI GCNGC 2 cut(s) 364, 1294
FokI GGATG 4 cut(s) 258, 342, 472, 1065
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 2 cut(s) 364, 1294
FspBI CTAG 3 cut(s) 200, 447, 497
GlaI GCGC 1 cut(s) 579
GluI GCNGC 2 cut(s) 364, 1294
GsaI CCCAGC 1 cut(s) 1146
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 7 cut(s) 60, 567, 800, 844, 885, 943, 1391
HapII CCGG 4 cut(s) 183, 575, 940, 1018
HhaI GCGC 1 cut(s) 580
Hin1II CATG 7 cut(s) 20, 85, 107, 651, 843, 1049, 1211
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 1 cut(s) 1376
HinfI GANTC 8 cut(s) 11, 150, 179, 260, 518, 586, 836, 1147
HpaII CCGG 4 cut(s) 183, 575, 940, 1018
HphI GGTGA 2 cut(s) 118, 967
Hpy166II GTNNAC 2 cut(s) 393, 601
Hpy188I TCNGA 7 cut(s) 10, 318, 360, 376, 517, 608, 875
Hpy188III TCNNGA 2 cut(s) 510, 1213
Hpy8I GTNNAC 2 cut(s) 393, 601
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 6 cut(s) 74, 203, 1124, 1262, 1328, 1340
HpyCH4III ACNGT 1 cut(s) 1440
HpyCH4IV ACGT 1 cut(s) 1124
HpyCH4V TGCA 6 cut(s) 272, 302, 366, 1085, 1207, 1382
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 319, 404, 538, 641, 789, 1388, 1397
HpyF3I CTNAG 9 cut(s) 87, 225, 373, 399, 846, 900, 925, 1176, 1240
HpySE526I ACGT 1 cut(s) 1124
Hsp92II CATG 7 cut(s) 20, 85, 107, 651, 843, 1049, 1211
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 4 cut(s) 19, 808, 1155, 1326
Kzo9I GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 3 cut(s) 289, 653, 941
MaeI CTAG 3 cut(s) 200, 447, 497
MaeII ACGT 1 cut(s) 1124
MaeIII GTNAC 4 cut(s) 115, 420, 741, 1074
MalI GATC 8 cut(s) 21, 168, 514, 810, 959, 1157, 1328, 1459
MboI GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
MboII GAAGA 8 cut(s) 982, 989, 1013, 1228, 1364, 1371, 1410, 1460
MhlI GDGCHC 2 cut(s) 854, 1057
MlsI TGGCCA 1 cut(s) 1391
MluCI AATT 6 cut(s) 120, 289, 332, 569, 1117, 1443
MluNI TGGCCA 1 cut(s) 1391
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 6 cut(s) 127, 660, 774, 978, 1094, 1107
Mox20I TGGCCA 1 cut(s) 1391
MscI TGGCCA 1 cut(s) 1391
MseI TTAA 5 cut(s) 1023, 1040, 1100, 1302, 1442
Msp20I TGGCCA 1 cut(s) 1391
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 4 cut(s) 183, 575, 940, 1018
MspR9I CCNGG 2 cut(s) 57, 534
MvaI CCWGG 2 cut(s) 57, 534
MwoI GCNNNNNNNGC 8 cut(s) 83, 319, 404, 538, 641, 789, 1388, 1397
NcoI CCATGG 1 cut(s) 1045
NdeII GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
NlaIII CATG 7 cut(s) 20, 85, 107, 651, 843, 1049, 1211
NlaIV GGNNCC 3 cut(s) 531, 1056, 1237
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 3 cut(s) 115, 741, 1074
NspI RCATGY 1 cut(s) 1211
PceI AGGCCT 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 888
PfeI GAWTC 7 cut(s) 150, 179, 260, 518, 586, 836, 1147
PkrI GCNGC 2 cut(s) 365, 1295
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 854
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 55, 532
PspEI GGTNACC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 1142
PspGI CCWGG 2 cut(s) 55, 532
PspN4I GGNNCC 3 cut(s) 531, 1056, 1237
PspPI GGNCC 3 cut(s) 493, 734, 1015
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 854
SaqAI TTAA 5 cut(s) 1023, 1040, 1100, 1302, 1442
SatI GCNGC 2 cut(s) 364, 1294
Sau3AI GATC 8 cut(s) 19, 166, 512, 808, 957, 1155, 1326, 1457
Sau96I GGNCC 3 cut(s) 493, 734, 1015
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 57, 534
SduI GDGCHC 2 cut(s) 854, 1057
SfaNI GCATC 3 cut(s) 289, 653, 941
SfcI CTRYAG 3 cut(s) 1083, 1311, 1401
SinI GGWCC 3 cut(s) 493, 734, 1015
SmlI CTYRAG 2 cut(s) 338, 823
SmoI CTYRAG 2 cut(s) 338, 823
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 6 cut(s) 120, 289, 332, 569, 1117, 1443
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 2 cut(s) 961, 1293
SspMI CTAG 3 cut(s) 200, 447, 497
SstI GAGCTC 1 cut(s) 854
StuI AGGCCT 1 cut(s) 800
StyD4I CCNGG 2 cut(s) 55, 532
StyI CCWWGG 3 cut(s) 425, 489, 1045
TaaI ACNGT 1 cut(s) 1440
TaiI ACGT 1 cut(s) 1127
TaqI TCGA 3 cut(s) 834, 891, 1121
TasI AATT 6 cut(s) 120, 289, 332, 569, 1117, 1443
TauI GCSGC 1 cut(s) 1296
TfiI GAWTC 7 cut(s) 150, 179, 260, 518, 586, 836, 1147
Tru1I TTAA 5 cut(s) 1023, 1040, 1100, 1302, 1442
Tru9I TTAA 5 cut(s) 1023, 1040, 1100, 1302, 1442
TscAI CASTG 7 cut(s) 351, 744, 824, 1248, 1290, 1336, 1389
TseFI GTSAC 3 cut(s) 115, 741, 1074
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 3 cut(s) 115, 741, 1074
TspDTI ATGAA 4 cut(s) 185, 199, 828, 1189
TspGWI ACGGA 3 cut(s) 633, 701, 1242
TspRI CASTG 7 cut(s) 351, 744, 824, 1248, 1290, 1336, 1389
VpaK11BI GGWCC 3 cut(s) 493, 734, 1015
VspI ATTAAT 1 cut(s) 1040
XapI RAATTY 1 cut(s) 1117
XceI RCATGY 1 cut(s) 1211
XspI CTAG 3 cut(s) 200, 447, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.