Rorug03G0115300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002880
Physical Location & Seq
Reverse (-)
9349803 .. 9351766
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0115300.1

Sequence Viewer

Length: 705 bp
ATGGATCGAGCTCAGTTGGTTCTGGTTGCGTTACCAATCTTTCTGTTCTGCAGAGACATTTTCAACCTTTTCACACCTAGACCTCCAAAACCTACCCAGTATCATTATCACCAGATTGTTGATCCTGATGAACCAGACCCTGATCCCCAACCCGAACAGCAACAGATTCTCCAAGAGCCGCTAAAATTCCCAGTTCAGCAGAAATCCGATGGCATTGGAGAAACTGGCATAGGAAGCACCATCAACATTGATTTTTGCACATCTTGTTCTTACAGAGGAAATGCAATAACAATGAAAAACATGCTGGCAACATCATATCCTGGGATCACTGTAATCCTAGCAAACCATCCTGCTTCATTTTCGAAACGTCTGTTGAGCAAATTGGTACCAGTTGTTCAAGTAGGAATCATCGGGACGATATTGGGTGGTGAGCAAATTTTTCAAAGGTTGGGGATGGTGCCACCACCTTCTTGGTACGAGTCCTTGAAAGCTAATAGATTTGGGAGCATTGCAAGCAGTTGGCTTTTGGGGAACTTCCTCCAGTCCTACCTTCACAGTACAGGAGCTTTTGAAGTCTTTTGTAATGGTGAATTGGTCTTTTCAAAGCTGAAGGAGGAGAGATTCCCCAGTGAAATTGAGTTGAGGGATCTGGTCGGGAAGAAGCTTGCTAATTTGAGAAAAACTCCAAAAGCTGATATCAAATAA

Protein Analysis

234

Amino Acids

26.18

Weight (kDa)

8.3

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rdx PF10262 80 - 218 1.8e-17 Rdx family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 385, 457
AciI CCGC 1 cut(s) 179
AclWI GGATC 5 cut(s) 12, 116, 137, 332, 654
AcsI RAATTY 2 cut(s) 185, 435
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 3 cut(s) 387, 476, 559
AgsI TTSAA 6 cut(s) 64, 398, 443, 487, 572, 603
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 6 cut(s) 11, 491, 566, 607, 664, 692
AluI AGCT 6 cut(s) 11, 491, 566, 607, 664, 692
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 5 cut(s) 12, 116, 137, 332, 654
AlwNI CAGNNNCTG 1 cut(s) 140
ApoI RAATTY 2 cut(s) 185, 435
Asp718I GGTACC 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 101, 440, 599
AsuII TTCGAA 1 cut(s) 362
BanI GGYRCC 2 cut(s) 385, 457
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 4 cut(s) 203, 248, 354, 448
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 78, 338
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 387, 459
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 3 cut(s) 91, 185, 621
BmuI ACTGGG 3 cut(s) 91, 185, 621
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpmI CTGGAG 1 cut(s) 524
Bpu14I TTCGAA 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse1I ACTGG 6 cut(s) 97, 191, 229, 389, 541, 627
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 346, 459
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 6 cut(s) 97, 191, 229, 389, 541, 627
BseRI GAGGAG 1 cut(s) 629
BshNI GGYRCC 2 cut(s) 385, 457
BsiHKAI GWGCWC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 4, 121, 142, 324, 646
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 387, 459
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 5 cut(s) 12, 116, 137, 332, 654
BspT104I TTCGAA 1 cut(s) 362
BspT107I GGYRCC 2 cut(s) 385, 457
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 6 cut(s) 97, 191, 229, 389, 541, 627
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 5 cut(s) 4, 121, 142, 324, 646
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 331, 557
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 306, 514, 666
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 346, 459
BstKTI GATC 5 cut(s) 7, 124, 145, 327, 649
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 5 cut(s) 4, 121, 142, 324, 646
BstMWI GCNNNNNNNGC 2 cut(s) 234, 513
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 646
BtsCI GGATG 2 cut(s) 346, 459
BtsIMutI CAGTG 2 cut(s) 327, 634
Cac8I GCNNGC 3 cut(s) 306, 514, 666
CaiI CAGNNNCTG 1 cut(s) 140
Csp6I GTAC 3 cut(s) 386, 475, 558
CviAII CATG 1 cut(s) 301
CviJI RGCY 8 cut(s) 11, 178, 491, 523, 566, 607, 664, 692
CviKI_1 RGCY 8 cut(s) 11, 178, 491, 523, 566, 607, 664, 692
CviQI GTAC 3 cut(s) 386, 475, 558
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 6, 123, 144, 326, 648
DpnII GATC 5 cut(s) 4, 121, 142, 324, 646
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 697
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 230, 302, 316
FaqI GGGAC 1 cut(s) 427
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 333, 466
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 2 cut(s) 78, 338
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 524
Hin1II CATG 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 4 cut(s) 166, 405, 479, 621
HphI GGTGA 3 cut(s) 101, 440, 599
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 125, 412, 655
HpyAV CCTTC 3 cut(s) 477, 560, 604
HpyCH4III ACNGT 2 cut(s) 331, 557
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 51, 258, 284, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 513
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 1 cut(s) 304
KpnI GGTACC 1 cut(s) 389
Kzo9I GATC 5 cut(s) 4, 121, 142, 324, 646
LmnI GCTCC 2 cut(s) 504, 563
MaeI CTAG 2 cut(s) 78, 338
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 30
MalI GATC 5 cut(s) 6, 123, 144, 326, 648
MboI GATC 5 cut(s) 4, 121, 142, 324, 646
MboII GAAGA 1 cut(s) 670
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 6 cut(s) 185, 380, 435, 590, 633, 670
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 5 cut(s) 93, 269, 548, 607, 636
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 234, 513
NdeII GATC 5 cut(s) 4, 121, 142, 324, 646
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 387, 459
NspI RCATGY 1 cut(s) 304
NspV TTCGAA 1 cut(s) 362
PfeI GAWTC 3 cut(s) 166, 405, 621
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 387, 459
PsrI GAACNNNNNNTAC 2 cut(s) 378, 410
PstI CTGCAG 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 3 cut(s) 387, 476, 559
RsaNI GTAC 3 cut(s) 386, 475, 558
SacI GAGCTC 1 cut(s) 13
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 5 cut(s) 4, 121, 142, 324, 646
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 362
Sse9I AATT 6 cut(s) 185, 380, 435, 590, 633, 670
SsiI CCGC 1 cut(s) 179
SspMI CTAG 2 cut(s) 78, 338
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 331, 557
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 7, 362
TasI AATT 6 cut(s) 185, 380, 435, 590, 633, 670
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 3 cut(s) 166, 405, 621
TscAI CASTG 2 cut(s) 334, 634
TspDTI ATGAA 3 cut(s) 144, 308, 345
TspRI CASTG 2 cut(s) 334, 634
XapI RAATTY 2 cut(s) 185, 435
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 468
XspI CTAG 2 cut(s) 78, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.