Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Reverse (-)

16499072 .. 16499395

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTTCAGAATCCCATGATCAACTTCACTTTGTTTTAATACCTCTAATGTCTCCAGGGCACCTCAAACCAATGGCAGACATGGCTAAGCTCTTGGCACTACATGGTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCGAATCACACCAATCATAGATCGTGCGATTGATTCTGGTCTCCCTATTCATATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGGTTTGCCAGAGGGATGTGAAAACTTGGATTCAGTTCCCTCAAGAAACTTGTTTCTGAATTTCTTTGATGCAGTTAGCAAGCTGCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

107

Amino Acids

11.79

Weight (kDa)

5.89

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	91, 313
AluI	AGCT	2 cut(s)	91, 313
Alw26I	GTCTC	2 cut(s)	57, 191
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	57, 191
BisI	GCNGC	1 cut(s)	314
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	57, 191
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	19, 166
Bsp1720I	GCTNAGC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	19, 166
Bst2UI	CCWGG	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	22, 169
BstMAI	GTCTC	2 cut(s)	57, 191
BstMBI	GATC	2 cut(s)	19, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	311
CviAII	CATG	4 cut(s)	17, 82, 104, 224
CviJI	RGCY	4 cut(s)	5, 86, 91, 313
CviKI_1	RGCY	4 cut(s)	5, 86, 91, 313
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	21, 168
DpnII	GATC	2 cut(s)	19, 166
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	20, 85, 107, 227
FaiI	YATR	7 cut(s)	18, 83, 105, 164, 198, 200, 225
FatI	CATG	4 cut(s)	16, 81, 103, 223
FauNDI	CATATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	20, 85, 107, 227
HinfI	GANTC	4 cut(s)	11, 150, 179, 260
Hpy188I	TCNGA	2 cut(s)	10, 288
Hpy188III	TCNNGA	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	205, 302, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	20, 85, 107, 227
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 166
LpnPI	CCDG	4 cut(s)	42, 69, 168, 252
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	115, 124
MalI	GATC	2 cut(s)	21, 168
MboI	GATC	2 cut(s)	19, 166
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	120, 289
MnlI	CCTC	4 cut(s)	54, 74, 235, 280
MseI	TTAA	2 cut(s)	38, 138
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	2 cut(s)	19, 166
NlaIII	CATG	4 cut(s)	20, 85, 107, 227
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	11, 150, 179, 260
PkrI	GCNGC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	38, 138
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	19, 166
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	4 cut(s)	46, 66, 93, 315
SfaNI	GCATC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	2 cut(s)	120, 289
StyD4I	CCNGG	1 cut(s)	55
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	120, 289
TfiI	GAWTC	4 cut(s)	11, 150, 179, 260
Tru1I	TTAA	2 cut(s)	38, 138
Tru9I	TTAA	2 cut(s)	38, 138
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	185
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.