Rroxscaffold_6G00410290

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002880
Physical Location & Seq
Reverse (-)
32729650 .. 32731853
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410290.1

Sequence Viewer

Length: 1578 bp
ATGCCCTCATTATCGTATCACTATATTCTAACCCCAGTCAAATTTCTTCATTTAGATTACTTACATCTTCCCCTCAAATTATATCATTGCAAGTATTTAGGTGCTCTTACAATGGCTTCAGAATCCCATGATCAACTTCACTTTGTTTTAATACCTCTAATGTCTCCAGGGCACCTCATACCAATGGCAGACATGGCTAAGCTATTGGCACAACATGGTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCGAATCGAACCAATCATAGATCGTGCGATTGATTCTGGTCTCCCTATTCATATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGGTTTGCCAGAGGGATGTGAAAACTTGGATTCAGTTCCCTCAAGAAACTTGTTTGTGAATTTCTTTGATGCAGTTAGCAAGCTGCATCAGTCAGTAGAACAATTGCTTGAAACAATAAAACCCATTCCAAGCTGCATAATTTCAGATAGAGGTCTTTCATGGGCGGCTGAGCTTGCTCAGAAGTTTGGGTTACCAAATCTTTTGTTTGATGGGACTAATTGCTTTACTCTTTTGTGTACTCATAATATACAAGCACACAAGATCCTAGACAGTGTTTCAGGCTCAGACCCCTTTGTGGTGCCTGGTTTGCCTGATGACATTGAGCTTACTTCAGGCCAATTGCCGGGGCACCTGAATCCTTCGTCAGATGATTTAAGAGTTCTCCACAAAAAGATAGAGAAAGCTAAAGGATCTTTTGGAATTGTTGTGAATAGCTTTGAGGAGTTGGAACCGGAATATTTCTCAGAGTACAGAAAGGTTACTAGTAGAGTTTGGAGTATCGGTCCAGTGTCACTGTCCAACCAGACAGAACTGGACAAAGCTCAAAGAGGAAACAAGGCCTCAATTGATGAAAAAGAATGCCTGAAATGGCTTGATTCATGGCCTGAGAGGTCTGTGGTTTATGTATGTCTTGGAAGCCTTAGCCGTGTCACGACTCTTCAATTGATAGAGCTAGGTTTAGGCCTAGAAACTTCAGACTGTCCTTTTGTTTGGGTGATAAGCAGAAACAATTCAGAAGAATGGGGAAAATGGCTGTTCGAAGATGGATTTGAGGAGAGGATTAAAGGAAGAGGACTATTAATCTATGGTTGGGCACCACAAGTATTGATATTATCACATTCTTCAGTAGGTGGATTTCTAACACATGGTGGTTGGAATTCAACATTGGAAGGGATTTGTGCTGGGATTCCTATGATCACATGGCCTATGTTTGCTGAGCAGTTCTACAATGAGAAGTTGATAGTGCAGGTCTTGAAGATTGGTGAGAGAGTTGGGGCTAATGTGGGCATTCCATTGGGGAAACAAGAGAGCTCTAGGGTGTTGGTGAAGAGTGGTGAGTTTAAAGAGGTCATAGACAACGTGATGAACAAGGAAGGGAATAAAGAAGGAGAAGAGAGAAGAGAGAGAGCAAGAAAGCTTGCAATGATGGCAAAGAAAGCTACAGAGGAGGGAGGCTCTTCTTACCTTAATATTAGACTGTTAATTGAAGATATAAGATTATACAAACACAACTAG

Protein Analysis

525

Amino Acids

58.76

Weight (kDa)

5.86

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 304 - 437 1.6e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1300
AccB1I GGYRCC 4 cut(s) 171, 640, 690, 1156
AciI CCGC 1 cut(s) 506
AclWI GGATC 2 cut(s) 598, 760
AcsI RAATTY 3 cut(s) 41, 400, 1219
AcuI CTGAAG 4 cut(s) 102, 657, 1020, 1170
AdeI CACNNNGTG 1 cut(s) 1211
AfaI GTAC 2 cut(s) 580, 812
AfiI CCNNNNNNNGG 2 cut(s) 637, 685
AgsI TTSAA 5 cut(s) 452, 1004, 1224, 1318, 1550
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 2 cut(s) 166, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 1211, 1243
Alw21I GWGCWC 2 cut(s) 106, 1376
Alw26I GTCTC 2 cut(s) 168, 302
AlwI GGATC 2 cut(s) 598, 760
AoxI GGCC 5 cut(s) 676, 900, 944, 1024, 1265
ApeKI GCWGC 2 cut(s) 424, 474
ApoI RAATTY 3 cut(s) 41, 400, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
AseI ATTAAT 1 cut(s) 1142
Asp700I GAANNNNTTC 1 cut(s) 1072
AspS9I GGNCC 1 cut(s) 845
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 4 cut(s) 1069, 1337, 1399, 1409
AsuII TTCGAA 2 cut(s) 259, 1101
AvaII GGWCC 1 cut(s) 845
BaeGI GKGCMC 3 cut(s) 174, 693, 1159
BanI GGYRCC 4 cut(s) 171, 640, 690, 1156
BanII GRGCYC 1 cut(s) 1376
Bbv12I GWGCWC 2 cut(s) 106, 1376
BbvI GCAGC 2 cut(s) 411, 461
BccI CCATC 3 cut(s) 545, 1100, 1483
BceAI ACGGC 1 cut(s) 972
BciT130I CCWGG 2 cut(s) 168, 645
BclI TGATCA 2 cut(s) 130, 1257
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 168, 302
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 6 cut(s) 608, 825, 1016, 1028, 1377, 1576
BfmI CTRYAG 1 cut(s) 1503
BfuAI ACCTGC 1 cut(s) 1300
BisI GCNGC 3 cut(s) 425, 475, 507
BlpI GCTNAGC 3 cut(s) 198, 510, 1278
BlsI GCNGC 3 cut(s) 426, 476, 508
Bme1390I CCNGG 3 cut(s) 168, 645, 687
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 5 cut(s) 173, 642, 692, 792, 1158
BmrFI CCNGG 3 cut(s) 168, 645, 687
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 400, 436
BmuI ACTGGG 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 1502, 1534
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 983
Bpu1102I GCTNAGC 3 cut(s) 198, 510, 1278
Bpu14I TTCGAA 2 cut(s) 259, 1101
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 167, 686
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 685
Bse1I ACTGG 3 cut(s) 35, 848, 879
Bse3DI GCAATG 2 cut(s) 85, 1491
BseBI CCWGG 2 cut(s) 168, 645
BseDI CCNNGG 2 cut(s) 167, 686
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 637, 685
BseMI GCAATG 2 cut(s) 85, 1491
BseMII CTCAG 6 cut(s) 501, 533, 639, 819, 939, 1269
BseNI ACTGG 3 cut(s) 35, 848, 879
BseRI GAGGAG 3 cut(s) 797, 1130, 1523
BseSI GKGCMC 3 cut(s) 174, 693, 1159
BseXI GCAGC 2 cut(s) 411, 461
BseYI CCCAGC 1 cut(s) 1244
BsgI GTGCAG 2 cut(s) 335, 1328
BshFI GGCC 5 cut(s) 678, 902, 946, 1026, 1267
BshNI GGYRCC 4 cut(s) 171, 640, 690, 1156
BsiHKAI GWGCWC 2 cut(s) 106, 1376
BsiSI CCGG 2 cut(s) 686, 794
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 637, 685
BsmAI GTCTC 2 cut(s) 168, 302
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 2 cut(s) 926, 1350
BsnI GGCC 5 cut(s) 678, 902, 946, 1026, 1267
Bso31I GGTCTC 1 cut(s) 302
Bsp119I TTCGAA 2 cut(s) 259, 1101
Bsp1286I GDGCHC 5 cut(s) 106, 174, 693, 1159, 1376
Bsp143I GATC 5 cut(s) 130, 277, 603, 752, 1257
Bsp1720I GCTNAGC 3 cut(s) 198, 510, 1278
BspACI CCGC 1 cut(s) 506
BspANI GGCC 5 cut(s) 678, 902, 946, 1026, 1267
BspCNI CTCAG 6 cut(s) 502, 532, 638, 818, 940, 1270
BspLI GGNNCC 5 cut(s) 173, 642, 692, 792, 1158
BspMI ACCTGC 1 cut(s) 1300
BspPI GGATC 2 cut(s) 598, 760
BspQI GCTCTTC 1 cut(s) 1525
BspT104I TTCGAA 2 cut(s) 259, 1101
BspT107I GGYRCC 4 cut(s) 171, 640, 690, 1156
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 85, 1491
BsrI ACTGG 3 cut(s) 35, 848, 879
BssECI CCNNGG 2 cut(s) 167, 686
BssMI GATC 5 cut(s) 130, 277, 603, 752, 1257
Bst2UI CCWGG 2 cut(s) 168, 645
Bst4CI ACNGT 4 cut(s) 614, 858, 1043, 1542
Bst6I CTCTTC 6 cut(s) 1005, 1126, 1385, 1449, 1456, 1525
BstBI TTCGAA 2 cut(s) 259, 1101
BstC8I GCNNGC 3 cut(s) 422, 516, 1482
BstDEI CTNAG 8 cut(s) 198, 510, 519, 625, 805, 948, 983, 1278
BstEII GGTNACC 1 cut(s) 531
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 5 cut(s) 133, 280, 606, 755, 1260
BstMAI GTCTC 2 cut(s) 168, 302
BstMBI GATC 5 cut(s) 130, 277, 603, 752, 1257
BstMWI GCNNNNNNNGC 5 cut(s) 194, 515, 649, 1490, 1499
BstNI CCWGG 2 cut(s) 168, 645
BstPI GGTNACC 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 166, 643, 685
BstSFI CTRYAG 1 cut(s) 1503
BstSLI GKGCMC 3 cut(s) 174, 693, 1159
BstV1I GCAGC 2 cut(s) 411, 461
BstX2I RGATCY 2 cut(s) 603, 752
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 2 cut(s) 603, 752
BsuRI GGCC 5 cut(s) 678, 902, 946, 1026, 1267
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 619, 854, 855
BveI ACCTGC 1 cut(s) 1300
Cac8I GCNNGC 3 cut(s) 422, 516, 1482
Cfr13I GGNCC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 579, 811
CspCI CAANNNNNGTGG 2 cut(s) 1149, 1184
CviAII CATG 8 cut(s) 128, 193, 215, 335, 501, 942, 1208, 1263
CviQI GTAC 2 cut(s) 579, 811
DdeI CTNAG 8 cut(s) 198, 510, 519, 625, 805, 948, 983, 1278
DpnI GATC 5 cut(s) 132, 279, 605, 754, 1259
DpnII GATC 5 cut(s) 130, 277, 603, 752, 1257
DraI TTTAAA 1 cut(s) 1405
DraIII CACNNNGTG 1 cut(s) 1211
Eam1104I CTCTTC 6 cut(s) 1005, 1126, 1385, 1449, 1456, 1525
EarI CTCTTC 6 cut(s) 1005, 1126, 1385, 1449, 1456, 1525
Ecl136II GAGCTC 1 cut(s) 1374
Eco147I AGGCCT 2 cut(s) 902, 1026
Eco24I GRGCYC 1 cut(s) 1376
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 845
Eco53kI GAGCTC 1 cut(s) 1374
Eco57I CTGAAG 4 cut(s) 102, 657, 1020, 1170
Eco91I GGTNACC 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 1374
EcoO65I GGTNACC 1 cut(s) 531
EcoRI GAATTC 1 cut(s) 1219
EcoRII CCWGG 2 cut(s) 166, 643
EcoT38I GRGCYC 1 cut(s) 1376
FaeI CATG 8 cut(s) 131, 196, 218, 338, 504, 945, 1211, 1266
FaqI GGGAC 1 cut(s) 568
FatI CATG 8 cut(s) 127, 192, 214, 334, 500, 941, 1207, 1262
FauNDI CATATG 1 cut(s) 309
FbaI TGATCA 2 cut(s) 130, 1257
Fnu4HI GCNGC 3 cut(s) 425, 475, 507
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 1376
Fsp4HI GCNGC 3 cut(s) 425, 475, 507
FspBI CTAG 6 cut(s) 608, 825, 1016, 1028, 1377, 1576
GluI GCNGC 3 cut(s) 425, 475, 507
GsaI CCCAGC 1 cut(s) 1248
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 5 cut(s) 678, 902, 946, 1026, 1267
HapII CCGG 2 cut(s) 686, 794
Hin1II CATG 8 cut(s) 131, 196, 218, 338, 504, 945, 1211, 1266
HindIII AAGCTT 1 cut(s) 1478
HinfI GANTC 8 cut(s) 122, 261, 290, 371, 697, 938, 997, 1249
HpaII CCGG 2 cut(s) 686, 794
HphI GGTGA 4 cut(s) 1069, 1337, 1399, 1409
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 8 cut(s) 121, 487, 522, 628, 709, 808, 1039, 1078
Hpy188III TCNNGA 3 cut(s) 384, 994, 1315
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 4 cut(s) 711, 1226, 1430, 1442
HpyCH4III ACNGT 4 cut(s) 614, 858, 1043, 1542
HpyCH4IV ACGT 1 cut(s) 1422
HpyCH4V TGCA 7 cut(s) 90, 316, 413, 427, 477, 1309, 1484
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 515, 649, 1490, 1499
HpyF3I CTNAG 8 cut(s) 198, 510, 519, 625, 805, 948, 983, 1278
HpySE526I ACGT 1 cut(s) 1422
Hsp92II CATG 8 cut(s) 131, 196, 218, 338, 504, 945, 1211, 1266
Ksp22I TGATCA 2 cut(s) 130, 1257
Kzo9I GATC 5 cut(s) 130, 277, 603, 752, 1257
LguI GCTCTTC 1 cut(s) 1525
Lsp1109I GCAGC 2 cut(s) 411, 461
LweI GCATC 2 cut(s) 400, 436
MaeI CTAG 6 cut(s) 608, 825, 1016, 1028, 1377, 1576
MaeII ACGT 1 cut(s) 1422
MaeIII GTNAC 6 cut(s) 226, 235, 531, 820, 852, 991
MalI GATC 5 cut(s) 132, 279, 605, 754, 1259
MboI GATC 5 cut(s) 130, 277, 603, 752, 1257
MfeI CAATTG 5 cut(s) 231, 443, 680, 906, 1004
MflI RGATCY 2 cut(s) 603, 752
MhlI GDGCHC 5 cut(s) 106, 174, 693, 1159, 1376
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 3 cut(s) 768, 885, 1196
MroXI GAANNNNTTC 1 cut(s) 1072
MseI TTAA 8 cut(s) 149, 249, 716, 1125, 1142, 1404, 1530, 1544
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 2 cut(s) 686, 794
MspR9I CCNGG 3 cut(s) 168, 645, 687
MunI CAATTG 5 cut(s) 231, 443, 680, 906, 1004
Mva1269I GAATGC 2 cut(s) 926, 1350
MvaI CCWGG 2 cut(s) 168, 645
MwoI GCNNNNNNNGC 5 cut(s) 194, 515, 649, 1490, 1499
NciI CCSGG 1 cut(s) 687
NdeI CATATG 1 cut(s) 309
NdeII GATC 5 cut(s) 130, 277, 603, 752, 1257
NlaIII CATG 8 cut(s) 131, 196, 218, 338, 504, 945, 1211, 1266
NlaIV GGNNCC 5 cut(s) 173, 642, 692, 792, 1158
NmuCI GTSAC 3 cut(s) 226, 852, 991
NspV TTCGAA 2 cut(s) 259, 1101
PceI AGGCCT 2 cut(s) 902, 1026
PciSI GCTCTTC 1 cut(s) 1525
PctI GAATGC 2 cut(s) 926, 1350
PdmI GAANNNNTTC 1 cut(s) 1072
PfeI GAWTC 7 cut(s) 122, 261, 290, 371, 697, 938, 1249
PkrI GCNGC 3 cut(s) 426, 476, 508
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
PshBI ATTAAT 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 1376
Psp6I CCWGG 2 cut(s) 166, 643
PspEI GGTNACC 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 1244
PspGI CCWGG 2 cut(s) 166, 643
PspN4I GGNNCC 5 cut(s) 173, 642, 692, 792, 1158
PspPI GGNCC 1 cut(s) 845
PsuI RGATCY 2 cut(s) 603, 752
RsaI GTAC 2 cut(s) 580, 812
RsaNI GTAC 2 cut(s) 579, 811
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 1376
SapI GCTCTTC 1 cut(s) 1525
SaqAI TTAA 8 cut(s) 149, 249, 716, 1125, 1142, 1404, 1530, 1544
SatI GCNGC 3 cut(s) 425, 475, 507
Sau3AI GATC 5 cut(s) 130, 277, 603, 752, 1257
Sau96I GGNCC 1 cut(s) 845
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 3 cut(s) 168, 645, 687
SduI GDGCHC 5 cut(s) 106, 174, 693, 1159, 1376
SfaNI GCATC 2 cut(s) 400, 436
SfcI CTRYAG 1 cut(s) 1503
SfuI TTCGAA 2 cut(s) 259, 1101
SinI GGWCC 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 824
SseBI AGGCCT 2 cut(s) 902, 1026
SsiI CCGC 1 cut(s) 506
SspI AATATT 2 cut(s) 800, 1534
SspMI CTAG 6 cut(s) 608, 825, 1016, 1028, 1377, 1576
SstI GAGCTC 1 cut(s) 1376
StuI AGGCCT 2 cut(s) 902, 1026
StyD4I CCNGG 3 cut(s) 166, 643, 685
TaaI ACNGT 4 cut(s) 614, 858, 1043, 1542
TaiI ACGT 1 cut(s) 1425
TaqI TCGA 3 cut(s) 259, 264, 1101
TaqII GACCGA 1 cut(s) 833
TatI WGTACW 2 cut(s) 578, 810
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 7 cut(s) 122, 261, 290, 371, 697, 938, 1249
Tru1I TTAA 8 cut(s) 149, 249, 716, 1125, 1142, 1404, 1530, 1544
Tru9I TTAA 8 cut(s) 149, 249, 716, 1125, 1142, 1404, 1530, 1544
TscAI CASTG 3 cut(s) 619, 855, 861
TseFI GTSAC 3 cut(s) 226, 852, 991
TseI GCWGC 2 cut(s) 424, 474
Tsp45I GTSAC 3 cut(s) 226, 852, 991
TspDTI ATGAA 6 cut(s) 38, 296, 489, 927, 930, 1442
TspRI CASTG 3 cut(s) 619, 855, 861
VpaK11BI GGWCC 1 cut(s) 845
VspI ATTAAT 1 cut(s) 1142
XapI RAATTY 3 cut(s) 41, 400, 1219
XmnI GAANNNNTTC 1 cut(s) 1072
XspI CTAG 6 cut(s) 608, 825, 1016, 1028, 1377, 1576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.