Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002012.1

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Reverse (-)

51805 .. 52389

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002012.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcttcagagtctcatgatcagcttcactttgttttgataccactaatgtctccgggccaccttctaccaatggcagacatggctaaggtgttggcacagcatggcctggtggtcacaattatcaccacacccctcaatgccattcgaatcaaaccgatgattgatcgcgccattgattccggtctctcccgtcatctagttcagtttagtttgccacttgctgagtgtggcctcccagaaggatgtgaaaacatggacacagtccctgcaagaaacttgttttggaatttcttggaggcaggtagcaggctgcaacagccaatagaagagttgcttgaaactgtacaaccccatccgagctgcataatttcagatagacacctgccttggacagcagagattgctcgaaagtttgggataccaaggtatttgtttgatggaactagttgcttcactctattgtctaactataatatagaaacatccaaggccctagagagtgtttcaggatcagagccatttctagtgcctgggttgcctgatgagattgagattaccttagtccagttaccggggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

5.03

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	393
Acc36I	ACCTGC	2 cut(s)	293, 393
AccII	CGCG	1 cut(s)	171
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	108, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	2 cut(s)	25, 363
AluI	AGCT	2 cut(s)	25, 363
Alw26I	GTCTC	3 cut(s)	18, 57, 191
AlwI	GGATC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	58, 106, 232, 492
ApeKI	GCWGC	2 cut(s)	313, 363
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	58, 493
AsuC2I	CCSGG	2 cut(s)	57, 576
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	148
BaeI	ACNNNNGTAYC	2 cut(s)	413, 446
BbvI	GCAGC	2 cut(s)	300, 350
BccI	CCATC	2 cut(s)	363, 434
BciT130I	CCWGG	2 cut(s)	110, 534
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	57, 576
BcoDI	GTCTC	3 cut(s)	18, 57, 191
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	4 cut(s)	200, 447, 497, 527
BfuAI	ACCTGC	2 cut(s)	293, 393
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	2 cut(s)	314, 364
BlsI	GCNGC	2 cut(s)	315, 365
Bme1390I	CCNGG	4 cut(s)	57, 110, 534, 576
BmgT120I	GGNCC	2 cut(s)	58, 493
BmrFI	CCNGG	4 cut(s)	57, 110, 534, 576
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	57, 576
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	5 cut(s)	389, 425, 489, 533, 575
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	110, 534
BseDI	CCNNGG	5 cut(s)	389, 425, 489, 533, 575
BseGI	GGATG	3 cut(s)	251, 355, 485
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	300, 350
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	4 cut(s)	60, 108, 234, 494
BsiSI	CCGG	3 cut(s)	56, 183, 575
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	3 cut(s)	18, 57, 191
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	60, 108, 234, 494
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	19, 166, 512
BspANI	GGCC	4 cut(s)	60, 108, 234, 494
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	293, 393
BspPI	GGATC	1 cut(s)	520
BspT104I	TTCGAA	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	5 cut(s)	389, 425, 489, 533, 575
BssMI	GATC	3 cut(s)	19, 166, 512
BssT1I	CCWWGG	3 cut(s)	389, 425, 489
Bst2UI	CCWGG	2 cut(s)	110, 534
Bst4CI	ACNGT	2 cut(s)	265, 346
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	87, 225, 562
BstF5I	GGATG	3 cut(s)	251, 355, 485
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	22, 169, 515
BstMAI	GTCTC	3 cut(s)	18, 57, 191
BstMBI	GATC	3 cut(s)	19, 166, 512
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 319, 404, 538
BstNI	CCWGG	2 cut(s)	110, 534
BstSCI	CCNGG	4 cut(s)	55, 108, 532, 574
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	300, 350
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	60, 108, 234, 494
BtsCI	GGATG	3 cut(s)	251, 355, 485
BveI	ACCTGC	2 cut(s)	293, 393
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	58, 493
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	4 cut(s)	17, 82, 104, 256
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	87, 225, 562
DpnI	GATC	3 cut(s)	21, 168, 514
DpnII	GATC	3 cut(s)	19, 166, 512
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	389, 425, 489
Eco31I	GGTCTC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	108, 532
EcoT14I	CCWWGG	3 cut(s)	389, 425, 489
ErhI	CCWWGG	3 cut(s)	389, 425, 489
FaeI	CATG	4 cut(s)	20, 85, 107, 259
FaiI	YATR	7 cut(s)	18, 83, 105, 257, 368, 474, 479
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	16, 81, 103, 255
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	314, 364
FokI	GGATG	3 cut(s)	258, 342, 472
Fsp4HI	GCNGC	2 cut(s)	314, 364
FspBI	CTAG	4 cut(s)	200, 447, 497, 527
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	314, 364
HaeIII	GGCC	4 cut(s)	60, 108, 234, 494
HapII	CCGG	3 cut(s)	56, 183, 575
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	4 cut(s)	20, 85, 107, 259
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	3 cut(s)	11, 150, 179
HpaII	CCGG	3 cut(s)	56, 183, 575
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	10, 360, 376, 517
Hpy188III	TCNNGA	2 cut(s)	17, 510
HpyAV	CCTTC	2 cut(s)	74, 236
HpyCH4III	ACNGT	2 cut(s)	265, 346
HpyCH4V	TGCA	3 cut(s)	272, 316, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 319, 404, 538
HpyF3I	CTNAG	3 cut(s)	87, 225, 562
Hsp92II	CATG	4 cut(s)	20, 85, 107, 259
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 166, 512
Lsp1109I	GCAGC	2 cut(s)	300, 350
MaeI	CTAG	4 cut(s)	200, 447, 497, 527
MaeIII	GTNAC	2 cut(s)	115, 570
MalI	GATC	3 cut(s)	21, 168, 514
MboI	GATC	3 cut(s)	19, 166, 512
MboII	GAAGA	1 cut(s)	341
MluCI	AATT	3 cut(s)	120, 289, 369
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	3 cut(s)	146, 245, 292
MspI	CCGG	3 cut(s)	56, 183, 575
MspR9I	CCNGG	4 cut(s)	57, 110, 534, 576
MvaI	CCWGG	2 cut(s)	110, 534
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	83, 319, 404, 538
NciI	CCSGG	2 cut(s)	57, 576
NdeII	GATC	3 cut(s)	19, 166, 512
NlaIII	CATG	4 cut(s)	20, 85, 107, 259
NmuCI	GTSAC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	148
PagI	TCATGA	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	150, 179
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	315, 365
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	108, 532
PspGI	CCWGG	2 cut(s)	108, 532
PspPI	GGNCC	2 cut(s)	58, 493
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SatI	GCNGC	2 cut(s)	314, 364
Sau3AI	GATC	3 cut(s)	19, 166, 512
Sau96I	GGNCC	2 cut(s)	58, 493
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	4 cut(s)	57, 110, 534, 576
SetI	ASST	8 cut(s)	27, 66, 93, 307, 365, 387, 431, 563
SfuI	TTCGAA	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	3 cut(s)	120, 289, 369
SspMI	CTAG	4 cut(s)	200, 447, 497, 527
StyD4I	CCNGG	4 cut(s)	55, 108, 532, 574
StyI	CCWWGG	3 cut(s)	389, 425, 489
TaaI	ACNGT	2 cut(s)	265, 346
TaqI	TCGA	2 cut(s)	148, 409
TasI	AATT	3 cut(s)	120, 289, 369
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	150, 179
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	313, 363
Tsp45I	GTSAC	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	289
XspI	CTAG	4 cut(s)	200, 447, 497, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.