Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

38498086 .. 38499719

Gene Structure 1634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTTCAGAGTCTCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCGGGCCACCTTCTACCAATGGGAGACATGGCTAAGGTGTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTCGAATCAAACCGATGATTGATCGCGCCATTGATTCCGGTCTCTCCCTTCATCTAGTTCAGTTTAGGTTGCCACTTGCTGAGTGTGGCCTCCCAGAGGGATGTGAAAACATGGACGCAGTCCCTGCAAGAAACTTGTTTTGGAATTTCTTTGAGGCAGACACCTGCCTTGGACAGCTGAGATTGCTCGAAAGTTTGGGATACCAAGGATCAGAGCCATTTCTAGTGCCTGGGTTGCCTGATGAGATTGAGATTACTTTAGTCCAGTTACCGGGGCACATGAATCCGGCTTCAGATGATTTCAGAGAGTTTTACAAAAAGATGAAGGAATCTGAAGAGGGAGCATGCGGGGTTGTTGTGAATAGCTTTGAGGATTTGGAACCAGAATATGTCAAAGAGTACAGAAAGTACCATTTGAGGCACGTACTCTCTGGCTTTAACTACCAATACCATCCTCTTGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

203

Amino Acids

22.84

Weight (kDa)

5.09

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	420, 498
AfaI	GTAC	3 cut(s)	545, 554, 570
AfiI	CCNNNNNNNGG	2 cut(s)	241, 415
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	4 cut(s)	25, 322, 510, 609
AluI	AGCT	4 cut(s)	25, 322, 510, 609
Alw26I	GTCTC	4 cut(s)	18, 57, 72, 191
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	58, 232
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	2 cut(s)	57, 417
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	423
BccI	CCATC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	57, 417
BcoDI	GTCTC	4 cut(s)	18, 57, 72, 191
BfaI	CTAG	2 cut(s)	200, 368
BfuAI	ACCTGC	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	338
Bme1390I	CCNGG	3 cut(s)	57, 375, 417
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	3 cut(s)	57, 375, 417
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	57, 417
BsaAI	YACGTR	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	313, 349, 374, 416
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 415
Bse1I	ACTGG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	4 cut(s)	313, 349, 374, 416
BseGI	GGATG	2 cut(s)	251, 595
BseLI	CCNNNNNNNGG	2 cut(s)	241, 415
BseMII	CTCAG	2 cut(s)	216, 314
BseNI	ACTGG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	60, 234
BsiSI	CCGG	4 cut(s)	56, 183, 416, 431
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	241, 415
BsmAI	GTCTC	4 cut(s)	18, 57, 72, 191
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	60, 234
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	19, 166, 353
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	60, 234
BspCNI	CTCAG	2 cut(s)	217, 315
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	313, 349, 374, 416
BssMI	GATC	3 cut(s)	19, 166, 353
BssT1I	CCWWGG	2 cut(s)	313, 349
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	490, 607
BstDEI	CTNAG	3 cut(s)	87, 225, 323
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	251, 595
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	22, 169, 356
BstMAI	GTCTC	4 cut(s)	18, 57, 72, 191
BstMBI	GATC	3 cut(s)	19, 166, 353
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 328, 379
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	3 cut(s)	55, 373, 415
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	60, 234
BtsCI	GGATG	2 cut(s)	251, 595
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	490, 607
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	544, 553, 569
CviAII	CATG	6 cut(s)	17, 82, 104, 256, 424, 489
CviQI	GTAC	3 cut(s)	544, 553, 569
DdeI	CTNAG	3 cut(s)	87, 225, 323
DpnI	GATC	3 cut(s)	21, 168, 355
DpnII	GATC	3 cut(s)	19, 166, 353
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	313, 349
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	420, 498
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	313, 349
ErhI	CCWWGG	2 cut(s)	313, 349
FaeI	CATG	6 cut(s)	20, 85, 107, 259, 427, 492
FaiI	YATR	7 cut(s)	18, 83, 105, 257, 425, 490, 534
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	6 cut(s)	16, 81, 103, 255, 423, 488
FauI	CCCGC	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	19
FokI	GGATG	2 cut(s)	258, 582
FspBI	CTAG	2 cut(s)	200, 368
GlaI	GCGC	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	60, 234
HapII	CCGG	4 cut(s)	56, 183, 416, 431
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	6 cut(s)	20, 85, 107, 259, 427, 492
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	5 cut(s)	11, 150, 179, 427, 473
HpaII	CCGG	4 cut(s)	56, 183, 416, 431
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	10, 358, 439, 449, 478
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	74, 203, 463
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 328, 379
HpyF3I	CTNAG	3 cut(s)	87, 225, 323
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	6 cut(s)	20, 85, 107, 259, 427, 492
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 166, 353
LmnI	GCTCC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	200, 368
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	115, 411
MalI	GATC	3 cut(s)	21, 168, 355
MboI	GATC	3 cut(s)	19, 166, 353
MboII	GAAGA	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	120, 289
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	8 cut(s)	146, 235, 245, 292, 475, 508, 555, 609
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	322, 609
MspI	CCGG	4 cut(s)	56, 183, 416, 431
MspR9I	CCNGG	3 cut(s)	57, 375, 417
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	269, 328, 379
NciI	CCSGG	2 cut(s)	57, 417
NdeII	GATC	3 cut(s)	19, 166, 353
NlaIII	CATG	6 cut(s)	20, 85, 107, 259, 427, 492
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	492
PagI	TCATGA	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	317
PfeI	GAWTC	4 cut(s)	150, 179, 427, 473
PflFI	GACNNNGTC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	2 cut(s)	322, 609
RsaI	GTAC	3 cut(s)	545, 554, 570
RsaNI	GTAC	3 cut(s)	544, 553, 569
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	3 cut(s)	19, 166, 353
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	3 cut(s)	57, 375, 417
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	9 cut(s)	27, 66, 93, 215, 311, 324, 512, 570, 611
SfuI	TTCGAA	1 cut(s)	148
SphI	GCATGC	1 cut(s)	492
Sse9I	AATT	2 cut(s)	120, 289
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	200, 368
StyD4I	CCNGG	3 cut(s)	55, 373, 415
StyI	CCWWGG	2 cut(s)	313, 349
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	148, 333
TasI	AATT	2 cut(s)	120, 289
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	150, 179, 427, 473
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	185, 440, 482
Tth111I	GACNNNGTC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	2 cut(s)	200, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.