Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

33235341 .. 33236740

Gene Structure 1400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTCCAGGACACCTCATACCAATGGCAGACATGGCTAAGCTATTGGCACAACATGGTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCGAGTCAAACCAATCATAGATCGTGCAATTGATTCTGGTCTCCCTATTCCTATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGGTTTGCCAGAGGGATGTGAAAACTTGGATTCAGTTCCCTTAAGAAACTTGTTTCTGAATTTCTTTGATGCAGTTAGCAAGCTGCATCAGTCAGTAGAACAATTGCTTGAAACAATAAAACCCATTCCAAGCTGCATAATTTTAGATAGAGGTCTTTCATGGGTGGCTGAGATTGCTCAAAAGTTTGGGTTACCAAGCTTTGAGGAGTTGGAACCGGAATATTTCAAAGAGTATAGAAAGGTCACTAGTAGAGTTTGGAGTATCGGTCTAGTGTCACTATCCAACCAGACAGAACTGGACAAAGCACAAAGAGGAAACAAGGCCTCAATTGATGAAAAAGAATGCTTGAAATGGCTTGATTCATGGCCTGAGAGGTCTGTGGTTTATGTATGTCTTGGAAGCCTTAGCCGCGTCACGACTCTTCAATTGATAGAGCTAGGTTTAGGCCTAGAAACTTCAGACTATCCTTTTGTTTGGGTGATAAGCAGAAACAATTCAGAAGAAAGGGGAAAATGGCTGTCCGAAGATGGATATGAGGAGAGGATTAAAGGAAGAGGACTATTAATCTATGGTTGGGCACTACAAGTATTGATATTATCACATTCTTCAGTAGGTGGATTTCTAACACATGGTGGTTGGAATTCAACATTGGAAGGGATTTGTGCTGGGATTCCTATGATCACAAGGCCTATGTTTGCTGAGCAGTTCTATCATGAGAAGTTGATAGTGCAAGTCTTGAAGATTGGTGAGAGAGTTGGGGTTAATGTGGGCATTCCATTGGGGAAACAAGAGAGCTCTAGGGTGTTGGTGAAGAGTGATGAGTTTAAAGAGGCCATAGACAACGTGATGAACAAGGAAGGGAATAAAGAAGGAGAAGAGAGGAGAGAGAGCAAGAAAGCTACAGAGGAGGGAGGCACTTCTTACCTTAATATTAGACTGTTAATTGAAGATATAAGATTATACAAACACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

386

Amino Acids

43.3

Weight (kDa)

5.64

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	174 - 301	1.5e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	241, 823
AcuI	CTGAAG	2 cut(s)	624, 774
AdeI	CACNNNGTG	1 cut(s)	815
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	7 cut(s)	293, 409, 532, 608, 828, 922, 1130
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	7 cut(s)	43, 265, 315, 381, 619, 978, 1082
AluI	AGCT	7 cut(s)	43, 265, 315, 381, 619, 978, 1082
Alw21I	GWGCWC	1 cut(s)	980
Alw26I	GTCTC	2 cut(s)	9, 143
AoxI	GGCC	5 cut(s)	504, 548, 628, 869, 1014
ApeKI	GCWGC	2 cut(s)	265, 315
ApoI	RAATTY	2 cut(s)	241, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AseI	ATTAAT	1 cut(s)	746
Asp700I	GAANNNNTTC	1 cut(s)	676
AsuHPI	GGTGA	3 cut(s)	673, 941, 1003
BaeGI	GKGCMC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	980
BbvI	GCAGC	2 cut(s)	252, 302
BccI	CCATC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	9, 143
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	6 cut(s)	429, 452, 620, 632, 981, 1156
BfmI	CTRYAG	1 cut(s)	1083
BfrI	CTTAAG	1 cut(s)	223
BisI	GCNGC	3 cut(s)	266, 316, 592
BlpI	GCTNAGC	2 cut(s)	39, 882
BlsI	GCNGC	3 cut(s)	267, 317, 593
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	241, 277
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu1102I	GCTNAGC	2 cut(s)	39, 882
BsaI	GGTCTC	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse1I	ACTGG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	342, 543, 873
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	4 cut(s)	401, 734, 1078, 1103
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	2 cut(s)	252, 302
BseYI	CCCAGC	1 cut(s)	848
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	5 cut(s)	506, 550, 630, 871, 1016
BsiHKAI	GWGCWC	1 cut(s)	980
BsiSI	CCGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	9, 143
BsmI	GAATGC	2 cut(s)	530, 954
BsnI	GGCC	5 cut(s)	506, 550, 630, 871, 1016
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	763, 980
Bsp143I	GATC	2 cut(s)	118, 861
Bsp1720I	GCTNAGC	2 cut(s)	39, 882
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	5 cut(s)	506, 550, 630, 871, 1016
BspCNI	CTCAG	3 cut(s)	343, 544, 874
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	118, 861
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	1122
Bst6I	CTCTTC	4 cut(s)	609, 730, 989, 1053
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	5 cut(s)	39, 351, 552, 587, 882
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	2 cut(s)	121, 864
BstMAI	GTCTC	2 cut(s)	9, 143
BstMBI	GATC	2 cut(s)	118, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 356, 591
BstNI	CCWGG	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	763
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	252, 302
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	5 cut(s)	506, 550, 630, 871, 1016
BtsCI	GGATG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	263
CciI	TCATGA	1 cut(s)	895
CseI	GACGC	1 cut(s)	583
CviAII	CATG	7 cut(s)	34, 56, 176, 342, 546, 812, 896
DdeI	CTNAG	5 cut(s)	39, 351, 552, 587, 882
DpnI	GATC	2 cut(s)	120, 863
DpnII	GATC	2 cut(s)	118, 861
DraI	TTTAAA	1 cut(s)	1009
DraIII	CACNNNGTG	1 cut(s)	815
Eam1104I	CTCTTC	4 cut(s)	609, 730, 989, 1053
EarI	CTCTTC	4 cut(s)	609, 730, 989, 1053
Ecl136II	GAGCTC	1 cut(s)	978
Eco147I	AGGCCT	3 cut(s)	506, 630, 871
Eco24I	GRGCYC	1 cut(s)	980
Eco31I	GGTCTC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	978
Eco57I	CTGAAG	2 cut(s)	624, 774
Eco91I	GGTNACC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	978
EcoO65I	GGTNACC	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	980
FaeI	CATG	7 cut(s)	37, 59, 179, 345, 549, 815, 899
FatI	CATG	7 cut(s)	33, 55, 175, 341, 545, 811, 895
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	3 cut(s)	266, 316, 592
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	3 cut(s)	266, 316, 592
FspBI	CTAG	6 cut(s)	429, 452, 620, 632, 981, 1156
GluI	GCNGC	3 cut(s)	266, 316, 592
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	5 cut(s)	506, 550, 630, 871, 1016
HapII	CCGG	1 cut(s)	398
HgaI	GACGC	1 cut(s)	583
Hin1II	CATG	7 cut(s)	37, 59, 179, 345, 549, 815, 899
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	6 cut(s)	102, 131, 212, 542, 601, 853
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	3 cut(s)	673, 941, 1003
Hpy188I	TCNGA	4 cut(s)	240, 643, 682, 706
Hpy188III	TCNNGA	3 cut(s)	598, 896, 919
HpyAV	CCTTC	3 cut(s)	830, 1034, 1046
HpyCH4III	ACNGT	1 cut(s)	1122
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	6 cut(s)	125, 157, 254, 268, 318, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 356, 591
HpyF3I	CTNAG	5 cut(s)	39, 351, 552, 587, 882
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	7 cut(s)	37, 59, 179, 345, 549, 815, 899
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	2 cut(s)	118, 861
LpnPI	CCDG	8 cut(s)	21, 120, 204, 411, 464, 482, 564, 834
Lsp1109I	GCAGC	2 cut(s)	252, 302
LweI	GCATC	2 cut(s)	241, 277
MaeI	CTAG	6 cut(s)	429, 452, 620, 632, 981, 1156
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	6 cut(s)	67, 76, 372, 424, 456, 595
MalI	GATC	2 cut(s)	120, 863
MboI	GATC	2 cut(s)	118, 861
MboII	GAAGA	9 cut(s)	596, 695, 719, 747, 780, 934, 1006, 1070, 1142
MfeI	CAATTG	5 cut(s)	72, 126, 284, 510, 608
MhlI	GDGCHC	2 cut(s)	763, 980
MlyI	GAGTC	2 cut(s)	111, 595
MmeI	TCCRAC	3 cut(s)	372, 489, 800
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	8 cut(s)	90, 224, 729, 746, 945, 1008, 1110, 1124
MslI	CAYNNNNRTG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	5 cut(s)	72, 126, 284, 510, 608
Mva1269I	GAATGC	2 cut(s)	530, 954
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	35, 356, 591
NdeII	GATC	2 cut(s)	118, 861
NlaIII	CATG	7 cut(s)	37, 59, 179, 345, 549, 815, 899
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	4 cut(s)	67, 424, 456, 595
PagI	TCATGA	1 cut(s)	895
PceI	AGGCCT	3 cut(s)	506, 630, 871
PctI	GAATGC	2 cut(s)	530, 954
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	4 cut(s)	131, 212, 542, 853
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	267, 317, 593
PleI	GAGTC	2 cut(s)	110, 595
PpsI	GAGTC	2 cut(s)	110, 595
PshBI	ATTAAT	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	1 cut(s)	7
PspEI	GGTNACC	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	980
SaqAI	TTAA	8 cut(s)	90, 224, 729, 746, 945, 1008, 1110, 1124
SatI	GCNGC	3 cut(s)	266, 316, 592
Sau3AI	GATC	2 cut(s)	118, 861
SchI	GAGTC	2 cut(s)	111, 595
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	763, 980
SfaNI	GCATC	2 cut(s)	241, 277
SfcI	CTRYAG	1 cut(s)	1083
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SpeI	ACTAGT	1 cut(s)	428
SseBI	AGGCCT	3 cut(s)	506, 630, 871
SsiI	CCGC	1 cut(s)	592
SspI	AATATT	2 cut(s)	404, 1114
SspMI	CTAG	6 cut(s)	429, 452, 620, 632, 981, 1156
SstI	GAGCTC	1 cut(s)	980
StuI	AGGCCT	3 cut(s)	506, 630, 871
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	1122
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	1 cut(s)	100
TaqII	GACCGA	1 cut(s)	437
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	4 cut(s)	131, 212, 542, 853
Tru1I	TTAA	8 cut(s)	90, 224, 729, 746, 945, 1008, 1110, 1124
Tru9I	TTAA	8 cut(s)	90, 224, 729, 746, 945, 1008, 1110, 1124
TseFI	GTSAC	4 cut(s)	67, 424, 456, 595
TseI	GCWGC	2 cut(s)	265, 315
Tsp45I	GTSAC	4 cut(s)	67, 424, 456, 595
TspDTI	ATGAA	4 cut(s)	330, 531, 534, 1046
Vha464I	CTTAAG	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	746
XapI	RAATTY	2 cut(s)	241, 823
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	6 cut(s)	429, 452, 620, 632, 981, 1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.