Rh3CG180200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002880
Physical Location & Seq
Forward (+)
15843411 .. 15843902
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG180200.1

Sequence Viewer

Length: 492 bp
ATGTCAAAGAGTATAGAAAGTAACGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAATACAAACTTGGAAAAAGCTCAAAGAGGCAACAAGGACTGCATTGATCAAAACCAGTGCTTGAGATGGCTTGATTCATGGCCTGAGGACTCAGTTGTTTATGCATGTCTTGGAAGCCTTGGCCGTATTGCAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTCATTTGGGTGATCAGCGGGAACAAAACAGTAGAATGGGGAAAATGGTTGTTGGAAGATGGATTTGAGGACAGGATTAAAGGTAGAGGCCTTTTAATCCATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGATTTTTAACACATTGTGGTTGGAATTCGATATTGGAAGCCATATGCCCTGGGATCCCAATGATTACATGGCCTAGGTTTGCTGAGCAGTTCTACAATGAGTAG

Protein Analysis

163

Amino Acids

18.22

Weight (kDa)

5.38

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 42 - 162 7.5e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 436, 449
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 412
AdeI CACNNNGTG 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 346, 383
AflIII ACRYGT 1 cut(s) 24
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 2 cut(s) 77, 208
AluI AGCT 2 cut(s) 77, 208
AlwI GGATC 2 cut(s) 436, 449
AoxI GGCC 5 cut(s) 137, 178, 236, 328, 458
ApoI RAATTY 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 38
AvrII CCTAGG 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 349
BccI CCATC 2 cut(s) 117, 293
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 2 cut(s) 103, 252
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 378
BlnI CCTAGG 1 cut(s) 461
BlpI GCTNAGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 351, 443
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 383
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 41, 112
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 346, 383
BseMII CTCAG 4 cut(s) 132, 162, 209, 462
BseNI ACTGG 2 cut(s) 41, 112
BseRI GAGGAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 352
BshFI GGCC 5 cut(s) 139, 180, 238, 330, 460
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 346, 383
BsnI GGCC 5 cut(s) 139, 180, 238, 330, 460
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 3 cut(s) 103, 252, 441
Bsp1720I GCTNAGC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 258
BspANI GGCC 5 cut(s) 139, 180, 238, 330, 460
BspCNI CTCAG 4 cut(s) 133, 161, 208, 463
BspLI GGNNCC 2 cut(s) 351, 443
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 436, 449
BspT107I GGYRCC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 2 cut(s) 41, 112
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BssMI GATC 3 cut(s) 103, 252, 441
BssT1I CCWWGG 3 cut(s) 175, 340, 461
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 271
BstDEI CTNAG 5 cut(s) 141, 148, 195, 220, 471
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 3 cut(s) 106, 255, 444
BstMBI GATC 3 cut(s) 103, 252, 441
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 5 cut(s) 139, 180, 238, 330, 460
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 48, 119
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 4 cut(s) 135, 162, 341, 456
DdeI CTNAG 5 cut(s) 141, 148, 195, 220, 471
DpnI GATC 3 cut(s) 105, 254, 443
DpnII GATC 3 cut(s) 103, 252, 441
DraIII CACNNNGTG 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 175, 340, 461
Eco147I AGGCCT 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 175, 340, 461
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 3 cut(s) 175, 340, 461
FaeI CATG 4 cut(s) 138, 165, 344, 459
FaiI YATR 8 cut(s) 14, 136, 159, 163, 342, 431, 433, 457
FatI CATG 4 cut(s) 134, 161, 340, 455
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 431
FbaI TGATCA 2 cut(s) 103, 252
FokI GGATG 1 cut(s) 360
FspBI CTAG 1 cut(s) 462
HaeIII GGCC 5 cut(s) 139, 180, 238, 330, 460
HapII CCGG 1 cut(s) 235
Hin1II CATG 4 cut(s) 138, 165, 344, 459
HinfI GANTC 2 cut(s) 131, 146
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 99, 161, 188, 380
HpyF3I CTNAG 5 cut(s) 141, 148, 195, 220, 471
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 138, 165, 344, 459
Ksp22I TGATCA 2 cut(s) 103, 252
Kzo9I GATC 3 cut(s) 103, 252, 441
LpnPI CCDG 8 cut(s) 54, 125, 153, 248, 298, 390, 423, 450
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 20, 45, 369
MalI GATC 3 cut(s) 105, 254, 443
MboI GATC 3 cut(s) 103, 252, 441
MboII GAAGA 1 cut(s) 308
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 78, 273, 389
MnlI CCTC 5 cut(s) 77, 136, 204, 301, 320
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 3 cut(s) 318, 335, 395
MslI CAYNNNNRTG 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
NcoI CCATGG 1 cut(s) 340
NdeI CATATG 1 cut(s) 431
NdeII GATC 3 cut(s) 103, 252, 441
NlaIII CATG 4 cut(s) 138, 165, 344, 459
NlaIV GGNNCC 2 cut(s) 351, 443
NmuCI GTSAC 2 cut(s) 45, 369
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 165
PasI CCCWGGG 1 cut(s) 437
PceI AGGCCT 1 cut(s) 330
PfeI GAWTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 351, 443
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 318, 335, 395
Sau3AI GATC 3 cut(s) 103, 252, 441
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 352
SetI ASST 5 cut(s) 27, 79, 210, 325, 467
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 462
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 3 cut(s) 175, 340, 461
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 416
TasI AATT 1 cut(s) 412
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 318, 335, 395
Tru9I TTAA 3 cut(s) 318, 335, 395
TscAI CASTG 2 cut(s) 48, 119
TseFI GTSAC 2 cut(s) 45, 369
Tsp45I GTSAC 2 cut(s) 45, 369
TspDTI ATGAA 2 cut(s) 123, 232
TspRI CASTG 2 cut(s) 48, 119
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmaJI CCTAGG 1 cut(s) 461
XspI CTAG 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.