Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Reverse (-)

16513998 .. 16514336

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG186000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTCAGAATCCCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCAGGCCACCTTATACCAATGGCAGACATGGCTAAGCTTTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTGGAATCAAACCGATCATTGACCGTGGCATTGATTCCGGTCTCTCCCTTCATCTGGTCCAGTTCAGTTTGCCACTTGCTGAGTATGGTTTGCCAGAGGGATGTGAAACAATGGAATCAGTCCCTGCAAGAAACTTGTTTCGGAATTTCTTTGATGCAGTTAGCAGGCTGCAGCAACCAGTAGAACTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

112

Amino Acids

12.26

Weight (kDa)

5.34

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	25, 91
AluI	AGCT	2 cut(s)	25, 91
Alw26I	GTCTC	2 cut(s)	57, 191
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	313, 316
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	300, 328
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	57, 191
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	314, 317
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	2 cut(s)	315, 318
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	205, 323
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	205, 323
BseXI	GCAGC	2 cut(s)	300, 328
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	57, 191
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	19, 159
Bsp1720I	GCTNAGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	205, 323
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	19, 159
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	87, 225
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	22, 162
BstMAI	GTCTC	2 cut(s)	57, 191
BstMBI	GATC	2 cut(s)	19, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	300, 328
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	202
CviAII	CATG	3 cut(s)	17, 82, 104
CviJI	RGCY	6 cut(s)	5, 25, 60, 86, 91, 313
CviKI_1	RGCY	6 cut(s)	5, 25, 60, 86, 91, 313
DdeI	CTNAG	2 cut(s)	87, 225
DpnI	GATC	2 cut(s)	21, 161
DpnII	GATC	2 cut(s)	19, 159
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	20, 85, 107
FaiI	YATR	5 cut(s)	18, 68, 83, 105, 231
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	16, 81, 103
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	314, 317
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	314, 317
GluI	GCNGC	2 cut(s)	314, 317
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	3 cut(s)	20, 85, 107
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	4 cut(s)	11, 150, 179, 260
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	10, 288
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	272, 302, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	87, 225
Hsp92II	CATG	3 cut(s)	20, 85, 107
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 159
LpnPI	CCDG	9 cut(s)	42, 69, 95, 185, 196, 218, 252, 282, 295
Lsp1109I	GCAGC	2 cut(s)	300, 328
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	21, 161
MboI	GATC	2 cut(s)	19, 159
MluCI	AATT	2 cut(s)	120, 289
MnlI	CCTC	2 cut(s)	146, 235
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	19, 159
NlaIII	CATG	3 cut(s)	20, 85, 107
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	11, 150, 179, 260
PkrI	GCNGC	2 cut(s)	315, 318
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	269
SatI	GCNGC	2 cut(s)	314, 317
Sau3AI	GATC	2 cut(s)	19, 159
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	3 cut(s)	27, 66, 93
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	120, 289
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	170
TasI	AATT	2 cut(s)	120, 289
TfiI	GAWTC	4 cut(s)	11, 150, 179, 260
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	313, 316
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.