Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013102.1

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

45468 .. 46566

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013102.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggaatcagtccctgcaagaaacttgtttcggaatttctttgagaacttacttgagacactaaaacctatgccgagctgcataatctcagataaacatcttccatggacaggatcagaaccatttctggtgcctggtttacctgatgagattgagcttactttagcccaattaccggcgcacttgaatcctgctaaagttgacttcagagatttccacagtaaagtagaggaagctacaaaaggatcattgtcactttccaacaatacaaacttggacaaagctcaaagaggcaacaaggactgcattgatcaaaaccagtgcttgagatggcttgattcatggcctgaggactcagttgtttatgcatgtcttggaagccttggccgtattgcaactcctcagttggtagagcttggattaggcttagaagcatcaaaccggcctttcatttgggtgatcagcgggaacaaaacagtagaatggggaaaatggttgttggaagatggatttgaggacaggattaaaggtagaggccttttaatccatggttgggcaccacaagtattgatattgtcacatcctgcagttggtgcatttttaacacattgtggttggaatttgatattggaagccatatgccctgggatcccaatgattacatggcctaggtttgctgagcagttctacaatgagaagttcatagtgcaagtcttgaagattggtgtgagagttggggccgcagtggtcattccattggggaaacaagaagggtctgtggtgtcagtgaagagtagcgagtttaaggaggctatagagagagtgatgatcacagaagggaataaagaaggagaagaaagaagagagagagagcaaagaagcttgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

296

Amino Acids

33.23

Weight (kDa)

5.73

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	130, 556
AciI	CCGC	2 cut(s)	465, 741
AclWI	GGATC	4 cut(s)	121, 253, 643, 656
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	34, 619
AcuI	CTGAAG	1 cut(s)	190
AdeI	CACNNNGTG	1 cut(s)	611
AfiI	CCNNNNNNNGG	4 cut(s)	110, 175, 553, 590
AgsI	TTSAA	2 cut(s)	187, 718
AjnI	CCWGG	2 cut(s)	133, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	6 cut(s)	78, 157, 236, 284, 415, 882
AluI	AGCT	6 cut(s)	78, 157, 236, 284, 415, 882
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	121, 253, 643, 656
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	6 cut(s)	344, 385, 443, 535, 665, 738
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	2 cut(s)	34, 619
Asp700I	GAANNNNTTC	1 cut(s)	123
AspA2I	CCTAGG	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	648
BanI	GGYRCC	2 cut(s)	130, 556
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	324, 500
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	135, 645
BclI	TGATCA	3 cut(s)	310, 459, 828
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	2 cut(s)	585, 813
BisI	GCNGC	2 cut(s)	79, 741
BlnI	CCTAGG	1 cut(s)	668
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	2 cut(s)	80, 742
Bme1390I	CCNGG	2 cut(s)	135, 645
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	4 cut(s)	132, 558, 650, 739
BmrFI	CCNGG	2 cut(s)	135, 645
BmsI	GCATC	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	74, 346
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	6 cut(s)	104, 382, 547, 643, 644, 668
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 175, 553, 590
Bse118I	RCCGGY	2 cut(s)	175, 441
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	135, 645
BseDI	CCNNGG	6 cut(s)	104, 382, 547, 643, 644, 668
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	4 cut(s)	110, 175, 553, 590
BseMII	CTCAG	5 cut(s)	102, 339, 369, 416, 669
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	6 cut(s)	346, 387, 445, 537, 667, 740
BshNI	GGYRCC	2 cut(s)	130, 556
BsiSI	CCGG	2 cut(s)	176, 442
BslI	CCNNNNNNNGG	4 cut(s)	110, 175, 553, 590
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	6 cut(s)	346, 387, 445, 537, 667, 740
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
Bsp1720I	GCTNAGC	1 cut(s)	678
Bsp19I	CCATGG	2 cut(s)	104, 547
BspACI	CCGC	2 cut(s)	465, 741
BspANI	GGCC	6 cut(s)	346, 387, 445, 537, 667, 740
BspCNI	CTCAG	5 cut(s)	101, 340, 368, 415, 670
BspLI	GGNNCC	4 cut(s)	132, 558, 650, 739
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	4 cut(s)	121, 253, 643, 656
BspT107I	GGYRCC	2 cut(s)	130, 556
BsrFI	RCCGGY	2 cut(s)	175, 441
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	2 cut(s)	175, 441
BssECI	CCNNGG	6 cut(s)	104, 382, 547, 643, 644, 668
BssMI	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
BssT1I	CCWWGG	4 cut(s)	104, 382, 547, 668
Bst2UI	CCWGG	2 cut(s)	135, 645
Bst4CI	ACNGT	2 cut(s)	221, 478
Bst6I	CTCTTC	2 cut(s)	785, 856
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	884
BstDEI	CTNAG	6 cut(s)	88, 348, 355, 402, 427, 678
BstDSI	CCRYGG	2 cut(s)	104, 547
BstF5I	GGATG	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	6 cut(s)	116, 248, 313, 462, 651, 831
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	2 cut(s)	135, 645
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	133, 643
BstSFI	CTRYAG	2 cut(s)	585, 813
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	6 cut(s)	346, 387, 445, 537, 667, 740
BtgI	CCRYGG	2 cut(s)	104, 547
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	4 cut(s)	326, 750, 792, 886
Cac8I	GCNNGC	1 cut(s)	884
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	175, 441
Cfr13I	GGNCC	1 cut(s)	738
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	5 cut(s)	105, 342, 369, 548, 663
DdeI	CTNAG	6 cut(s)	88, 348, 355, 402, 427, 678
DpnI	GATC	6 cut(s)	115, 247, 312, 461, 650, 830
DpnII	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	785, 856
EarI	CTCTTC	2 cut(s)	785, 856
Eco130I	CCWWGG	4 cut(s)	104, 382, 547, 668
Eco147I	AGGCCT	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	133, 643
EcoT14I	CCWWGG	4 cut(s)	104, 382, 547, 668
EcoT22I	ATGCAT	1 cut(s)	370
ErhI	CCWWGG	4 cut(s)	104, 382, 547, 668
FaeI	CATG	5 cut(s)	108, 345, 372, 551, 666
FatI	CATG	5 cut(s)	104, 341, 368, 547, 662
FauI	CCCGC	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	638
FbaI	TGATCA	3 cut(s)	310, 459, 828
Fnu4HI	GCNGC	2 cut(s)	79, 741
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	79, 741
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	79, 741
HaeIII	GGCC	6 cut(s)	346, 387, 445, 537, 667, 740
HapII	CCGG	2 cut(s)	176, 442
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	108, 345, 372, 551, 666
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	880
HinfI	GANTC	4 cut(s)	5, 187, 338, 353
HpaII	CCGG	2 cut(s)	176, 442
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	140, 202
Hpy188I	TCNGA	4 cut(s)	33, 91, 118, 209
Hpy188III	TCNNGA	1 cut(s)	715
Hpy8I	GTNNAC	2 cut(s)	140, 202
HpyAV	CCTTC	3 cut(s)	764, 830, 842
HpyCH4III	ACNGT	2 cut(s)	221, 478
HpyCH4V	TGCA	9 cut(s)	17, 81, 306, 368, 395, 587, 596, 709, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	6 cut(s)	88, 348, 355, 402, 427, 678
Hsp92II	CATG	5 cut(s)	108, 345, 372, 551, 666
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	3 cut(s)	310, 459, 828
Kzo9I	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	252, 576
MalI	GATC	6 cut(s)	115, 247, 312, 461, 650, 830
MboI	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
MboII	GAAGA	6 cut(s)	92, 515, 730, 802, 866, 873
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	3 cut(s)	34, 170, 619
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	285, 480, 596
MnlI	CCTC	7 cut(s)	223, 284, 343, 411, 508, 527, 802
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	4 cut(s)	525, 542, 602, 804
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	2 cut(s)	176, 442
MspR9I	CCNGG	2 cut(s)	135, 645
MvaI	CCWGG	2 cut(s)	135, 645
MwoI	GCNNNNNNNGC	1 cut(s)	593
NcoI	CCATGG	2 cut(s)	104, 547
NdeI	CATATG	1 cut(s)	638
NdeII	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
NlaIII	CATG	5 cut(s)	108, 345, 372, 551, 666
NlaIV	GGNNCC	4 cut(s)	132, 558, 650, 739
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	252, 576
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	372
PasI	CCCWGGG	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	5, 187, 338
PkrI	GCNGC	2 cut(s)	80, 742
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	133, 643
PspGI	CCWGG	2 cut(s)	133, 643
PspN4I	GGNNCC	4 cut(s)	132, 558, 650, 739
PspPI	GGNCC	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	589
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	648
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	4 cut(s)	525, 542, 602, 804
SatI	GCNGC	2 cut(s)	79, 741
Sau3AI	GATC	6 cut(s)	113, 245, 310, 459, 648, 828
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	135, 645
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	2 cut(s)	585, 813
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	53, 325
SmoI	CTYRAG	2 cut(s)	53, 325
Sse9I	AATT	3 cut(s)	34, 170, 619
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	2 cut(s)	465, 741
SspMI	CTAG	1 cut(s)	669
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	133, 643
StyI	CCWWGG	4 cut(s)	104, 382, 547, 668
TaaI	ACNGT	2 cut(s)	221, 478
TasI	AATT	3 cut(s)	34, 170, 619
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	3 cut(s)	5, 187, 338
Tru1I	TTAA	4 cut(s)	525, 542, 602, 804
Tru9I	TTAA	4 cut(s)	525, 542, 602, 804
TscAI	CASTG	3 cut(s)	326, 750, 792
TseFI	GTSAC	2 cut(s)	252, 576
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	252, 576
TspDTI	ATGAA	3 cut(s)	330, 439, 691
TspRI	CASTG	3 cut(s)	326, 750, 792
XapI	RAATTY	2 cut(s)	34, 619
XceI	RCATGY	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	660
XmaJI	CCTAGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	669
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.