Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010073.1

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

22036 .. 23510

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010073.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggcttcagagtcccatgatcagcttcactttgttttgataccactaatgtctccaggccaccttctaccaatggcagacatggctaagctattggcacagcatggtctggtggtcacaattatcaccacacctctcaatgctgttggaatcaaacctgtcattgatcgtgccattgattccggtctctcccttcatctagtccagttcattttgccacttgctgagtgtggtttgccagatggatgtgaaaacttggaatcagtccctgcaagaaacttgttttgtaatttctttgatgcagttagcaggcttcagaagccagtagagaaattgcttgatacactgaaaccccatccgagctgcataatctcagataaacatctgccgtggacagtgagattgctcaaaagtttgggttaccaaggatcagaatcatttatggtgcctggtttgcctgatgagattgaacttactttaggccaattaccggcgcacttgaatcctgctaatgttgacttcagagatttccacagaaaagtagaggaagctacaaaaggatcatgtggagttgttgtgaatagctttgagcagttggaaacagagtatgtcaaagagtataaaaaggttagtaacgtgtggagtattggtccagtgtcactttccaacaacacaaacttggacaaagctcaaagaggcaagtcaggcaacaaggcctccattgatcaacaccagtgcttgagatggctcgattcatggcctgagagctcggttgtctatgtatgtctcggaagcctcggccgtgtcgaaactcctcagttggtagagcttggattaggcttagaagcatcaaaccggccttttgtttgggtgatccgcagaaagaaaacagaagaatgggcaaaatggttgttggaagatggatttgaggaccggattaaaggtagaggactattaatccatggttgggcaccacaagtattgatattgtcacatcctgcagttggtgggtttttaacacattgtggttggaattcgacgttggaagggatttgtgctgggattccaatgatcacatttcctatgtttgctgagcagttctacaatgagaagttcatagtgcatgtcttgaagattggtgtgagagttggtgcctcagtggtcattccgttgggaaaacaagaagggtctgtggtgtcagtgaaaagcggcgagtttaaggaggctatagagaaagtgatgatcactgaagggaataaagaaggagaagaaagaagagagagagcaaagaagcttgcagtgatggccaagaaagctacagaggagggaggttcttcttacctcaacattagactgttaattgaagatgtaagatcatacaaacatcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

463

Amino Acids

51.39

Weight (kDa)

6.58

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	445, 970, 1151
AciI	CCGC	2 cut(s)	877, 1209
AclWI	GGATC	3 cut(s)	436, 568, 868
AcoI	YGGCCR	2 cut(s)	799, 1305
AcsI	RAATTY	1 cut(s)	1033
AcuI	CTGAAG	3 cut(s)	299, 505, 1269
AdeI	CACNNNGTG	1 cut(s)	1025
AfiI	CCNNNNNNNGG	3 cut(s)	490, 967, 1004
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	4 cut(s)	470, 502, 1132, 1364
AjnI	CCWGG	2 cut(s)	55, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	3 cut(s)	57, 191, 791
AlwI	GGATC	3 cut(s)	436, 568, 868
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	7 cut(s)	58, 481, 714, 758, 799, 857, 1305
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	1033
AseI	ATTAAT	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	650, 931
AsuHPI	GGTGA	2 cut(s)	118, 883
AvaII	GGWCC	2 cut(s)	650, 931
BaeGI	GKGCMC	1 cut(s)	973
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	3 cut(s)	445, 970, 1151
BanII	GRGCYC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	5 cut(s)	236, 363, 738, 914, 1297
BceAI	ACGGC	2 cut(s)	373, 786
BciT130I	CCWGG	2 cut(s)	57, 450
BclI	TGATCA	4 cut(s)	19, 724, 1071, 1242
BcoDI	GTCTC	3 cut(s)	57, 191, 791
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	3 cut(s)	999, 1227, 1317
BisI	GCNGC	2 cut(s)	364, 1210
BlpI	GCTNAGC	2 cut(s)	87, 1092
BlsI	GCNGC	2 cut(s)	365, 1211
Bme1390I	CCNGG	2 cut(s)	57, 450
Bme18I	GGWCC	2 cut(s)	650, 931
BmgT120I	GGNCC	2 cut(s)	650, 931
BmiI	GGNNCC	3 cut(s)	447, 972, 1153
BmrFI	CCNGG	2 cut(s)	57, 450
BmsI	GCATC	2 cut(s)	289, 857
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	2 cut(s)	87, 1092
BpuEI	CTTGAG	1 cut(s)	760
BsaBI	GATNNNNATC	2 cut(s)	381, 433
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	389, 424, 796, 961
BsaWI	WCCGGW	2 cut(s)	182, 933
BsaXI	ACNNNNNCTCC	6 cut(s)	561, 591, 634, 664, 701, 731
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 967, 1004
Bse118I	RCCGGY	2 cut(s)	490, 855
Bse1I	ACTGG	4 cut(s)	205, 323, 653, 733
Bse8I	GATNNNNATC	2 cut(s)	381, 433
BseBI	CCWGG	2 cut(s)	57, 450
BseDI	CCNNGG	4 cut(s)	389, 424, 796, 961
BseGI	GGATG	3 cut(s)	251, 355, 994
BseJI	GATNNNNATC	2 cut(s)	381, 433
BseLI	CCNNNNNNNGG	3 cut(s)	490, 967, 1004
BseMII	CTCAG	6 cut(s)	216, 387, 753, 830, 1083, 1170
BseNI	ACTGG	4 cut(s)	205, 323, 653, 733
BseRI	GAGGAG	2 cut(s)	804, 1337
BseSI	GKGCMC	1 cut(s)	973
BseX3I	CGGCCG	1 cut(s)	799
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	1058
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	7 cut(s)	60, 483, 716, 760, 801, 859, 1307
BshNI	GGYRCC	3 cut(s)	445, 970, 1151
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	4 cut(s)	183, 491, 856, 934
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	490, 967, 1004
BsmAI	GTCTC	3 cut(s)	57, 191, 791
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	7 cut(s)	60, 483, 716, 760, 801, 859, 1307
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	770, 973
Bsp143I	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
Bsp1720I	GCTNAGC	2 cut(s)	87, 1092
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	2 cut(s)	877, 1209
BspANI	GGCC	7 cut(s)	60, 483, 716, 760, 801, 859, 1307
BspCNI	CTCAG	6 cut(s)	217, 386, 754, 829, 1084, 1169
BspLI	GGNNCC	3 cut(s)	447, 972, 1153
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	3 cut(s)	436, 568, 868
BspT107I	GGYRCC	3 cut(s)	445, 970, 1151
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	490, 855
BsrI	ACTGG	4 cut(s)	205, 323, 653, 733
BssAI	RCCGGY	2 cut(s)	490, 855
BssECI	CCNNGG	4 cut(s)	389, 424, 796, 961
BssMI	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
BssT1I	CCWWGG	2 cut(s)	424, 961
Bst2UI	CCWGG	2 cut(s)	57, 450
Bst4CI	ACNGT	2 cut(s)	397, 1356
Bst6I	CTCTTC	1 cut(s)	1270
BstC8I	GCNNGC	2 cut(s)	311, 1296
BstDEI	CTNAG	8 cut(s)	87, 225, 373, 762, 816, 841, 1092, 1156
BstDSI	CCRYGG	2 cut(s)	389, 961
BstEII	GGTNACC	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	251, 355, 994
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	9 cut(s)	22, 169, 431, 563, 727, 876, 1074, 1245, 1376
BstMAI	GTCTC	3 cut(s)	57, 191, 791
BstMBI	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 319, 454, 705, 1304, 1313
BstNI	CCWGG	2 cut(s)	57, 450
BstNSI	RCATGY	1 cut(s)	1127
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	55, 448
BstSFI	CTRYAG	3 cut(s)	999, 1227, 1317
BstSLI	GKGCMC	1 cut(s)	973
BstV1I	GCAGC	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	799
BsuRI	GGCC	7 cut(s)	60, 483, 716, 760, 801, 859, 1307
BtgI	CCRYGG	2 cut(s)	389, 961
BtsCI	GGATG	3 cut(s)	251, 355, 994
BtsI	GCAGTG	1 cut(s)	1305
BtsIMutI	CAGTG	8 cut(s)	344, 402, 660, 740, 1164, 1206, 1245, 1305
Cac8I	GCNNGC	2 cut(s)	311, 1296
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	2 cut(s)	490, 855
Cfr13I	GGNCC	2 cut(s)	650, 931
CspCI	CAANNNNNGTGG	2 cut(s)	963, 998
CviAII	CATG	7 cut(s)	17, 82, 104, 564, 756, 962, 1124
DdeI	CTNAG	8 cut(s)	87, 225, 373, 762, 816, 841, 1092, 1156
DpnI	GATC	9 cut(s)	21, 168, 430, 562, 726, 875, 1073, 1244, 1375
DpnII	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
DraIII	CACNNNGTG	1 cut(s)	1025
EaeI	YGGCCR	2 cut(s)	799, 1305
EagI	CGGCCG	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	1270
EarI	CTCTTC	1 cut(s)	1270
Ecl136II	GAGCTC	1 cut(s)	768
EclXI	CGGCCG	1 cut(s)	799
Eco130I	CCWWGG	2 cut(s)	424, 961
Eco147I	AGGCCT	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	770
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	650, 931
Eco52I	CGGCCG	1 cut(s)	799
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	3 cut(s)	299, 505, 1269
Eco91I	GGTNACC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	768
EcoO65I	GGTNACC	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	1033
EcoRII	CCWGG	2 cut(s)	55, 448
EcoT14I	CCWWGG	2 cut(s)	424, 961
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	2 cut(s)	424, 961
FaeI	CATG	7 cut(s)	20, 85, 107, 567, 759, 965, 1127
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	7 cut(s)	16, 81, 103, 563, 755, 961, 1123
FbaI	TGATCA	4 cut(s)	19, 724, 1071, 1242
Fnu4HI	GCNGC	2 cut(s)	364, 1210
FokI	GGATG	3 cut(s)	258, 342, 981
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	2 cut(s)	364, 1210
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	364, 1210
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	7 cut(s)	60, 483, 716, 760, 801, 859, 1307
HapII	CCGG	4 cut(s)	183, 491, 856, 934
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	7 cut(s)	20, 85, 107, 567, 759, 965, 1127
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	1292
HinfI	GANTC	8 cut(s)	11, 150, 179, 260, 434, 502, 752, 1063
HpaII	CCGG	4 cut(s)	183, 491, 856, 934
HphI	GGTGA	2 cut(s)	118, 883
Hpy166II	GTNNAC	2 cut(s)	393, 517
Hpy188I	TCNGA	7 cut(s)	10, 318, 360, 376, 433, 524, 791
Hpy188III	TCNNGA	1 cut(s)	1129
Hpy8I	GTNNAC	2 cut(s)	393, 517
Hpy99I	CGWCG	1 cut(s)	1042
HpyAV	CCTTC	6 cut(s)	74, 203, 1040, 1178, 1244, 1256
HpyCH4III	ACNGT	2 cut(s)	397, 1356
HpyCH4IV	ACGT	2 cut(s)	636, 1040
HpyCH4V	TGCA	6 cut(s)	272, 302, 366, 1001, 1123, 1298
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 319, 454, 705, 1304, 1313
HpyF3I	CTNAG	8 cut(s)	87, 225, 373, 762, 816, 841, 1092, 1156
HpySE526I	ACGT	2 cut(s)	636, 1040
Hsp92II	CATG	7 cut(s)	20, 85, 107, 567, 759, 965, 1127
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	4 cut(s)	19, 724, 1071, 1242
Kzo9I	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	2 cut(s)	289, 857
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	636, 1040
MaeIII	GTNAC	5 cut(s)	115, 419, 632, 657, 990
MalI	GATC	9 cut(s)	21, 168, 430, 562, 726, 875, 1073, 1244, 1375
MboI	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
MboII	GAAGA	7 cut(s)	905, 929, 1144, 1280, 1287, 1326, 1376
MhlI	GDGCHC	2 cut(s)	770, 973
MlsI	TGGCCA	1 cut(s)	1307
MluCI	AATT	6 cut(s)	120, 289, 332, 485, 1033, 1359
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	6 cut(s)	127, 576, 690, 894, 1010, 1023
Mox20I	TGGCCA	1 cut(s)	1307
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	5 cut(s)	939, 956, 1016, 1218, 1358
Msp20I	TGGCCA	1 cut(s)	1307
MspI	CCGG	4 cut(s)	183, 491, 856, 934
MspR9I	CCNGG	2 cut(s)	57, 450
MvaI	CCWGG	2 cut(s)	57, 450
MwoI	GCNNNNNNNGC	6 cut(s)	83, 319, 454, 705, 1304, 1313
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
NlaIII	CATG	7 cut(s)	20, 85, 107, 567, 759, 965, 1127
NlaIV	GGNNCC	3 cut(s)	447, 972, 1153
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	3 cut(s)	115, 657, 990
NspI	RCATGY	1 cut(s)	1127
PceI	AGGCCT	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PfeI	GAWTC	7 cut(s)	150, 179, 260, 434, 502, 752, 1063
PkrI	GCNGC	2 cut(s)	365, 1211
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	770
Psp6I	CCWGG	2 cut(s)	55, 448
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	2 cut(s)	55, 448
PspN4I	GGNNCC	3 cut(s)	447, 972, 1153
PspPI	GGNCC	2 cut(s)	650, 931
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	770
SaqAI	TTAA	5 cut(s)	939, 956, 1016, 1218, 1358
SatI	GCNGC	2 cut(s)	364, 1210
Sau3AI	GATC	9 cut(s)	19, 166, 428, 560, 724, 873, 1071, 1242, 1373
Sau96I	GGNCC	2 cut(s)	650, 931
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	57, 450
SduI	GDGCHC	2 cut(s)	770, 973
SfaNI	GCATC	2 cut(s)	289, 857
SfcI	CTRYAG	3 cut(s)	999, 1227, 1317
SinI	GGWCC	2 cut(s)	650, 931
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
Sse9I	AATT	6 cut(s)	120, 289, 332, 485, 1033, 1359
SseBI	AGGCCT	1 cut(s)	716
SsiI	CCGC	2 cut(s)	877, 1209
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	770
StuI	AGGCCT	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	55, 448
StyI	CCWWGG	2 cut(s)	424, 961
TaaI	ACNGT	2 cut(s)	397, 1356
TaiI	ACGT	2 cut(s)	639, 1043
TaqI	TCGA	3 cut(s)	750, 807, 1037
TasI	AATT	6 cut(s)	120, 289, 332, 485, 1033, 1359
TauI	GCSGC	1 cut(s)	1212
TfiI	GAWTC	7 cut(s)	150, 179, 260, 434, 502, 752, 1063
Tru1I	TTAA	5 cut(s)	939, 956, 1016, 1218, 1358
Tru9I	TTAA	5 cut(s)	939, 956, 1016, 1218, 1358
TscAI	CASTG	8 cut(s)	351, 402, 660, 740, 1164, 1206, 1252, 1305
TseFI	GTSAC	3 cut(s)	115, 657, 990
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	3 cut(s)	115, 657, 990
TspDTI	ATGAA	4 cut(s)	185, 199, 744, 1105
TspGWI	ACGGA	1 cut(s)	1158
TspRI	CASTG	8 cut(s)	351, 402, 660, 740, 1164, 1206, 1252, 1305
VpaK11BI	GGWCC	2 cut(s)	650, 931
VspI	ATTAAT	1 cut(s)	956
XapI	RAATTY	1 cut(s)	1033
XceI	RCATGY	1 cut(s)	1127
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.