Rorug03G0115400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
9352327 .. 9355402
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0115400.1

Sequence Viewer

Length: 1338 bp
ATGGCGAGCTGGGTCCTCTCAGAATGTGGCCTAAGGCCTCTCCCCCAGGTTTCACCCAGACCCAGAACCAGAATCACCGCAAACCCAATAAAGCTTCCAACTTTGCAGAAGAACAACTTCGCAGATCTTGGATTCGGGTCGACCCGAATTTCAAGTGGGCGCTTTAGAAGGTGGGGAGTGAAGGTGAGTGCCCCATTGAAAGTTGCTTCTACAGAAGAAGATGAGGCAGAGAGAATGAGAGTCAATGGCGTTAATGGAGATGAAGAAGGGATTGAATTCGATCCGGGCTCACCTCCACCGTTCAAATTGGGTGATGTTAGAGCGGCAATCCCAAAGCATTGTTGGGTTAAGGACCCATGGAGGTCCATGAGCTATGTGGTTAGGGATGTGTTGGTGGTTTTTGGGTTGGCTGCGGCTGCGGTTTATATGAACAAGTGGTATGTTTGGCCTCTGTATTGGGTTGCTCAGGGGACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGACATGGAAGCTTTTCGAACAATTCAAAGCTAAATAGTGTGGTTGGACATCTATTGCATTCTTCCATACTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCACCATCAAAACCATGGACATGTTGAGAATGATGAATCATGGCATCCGTTGTCCGAGAGAATTTACAGAACTTTGGATAAAACAACAAAAATGTTGCGGTTCACTTTGCCTTTTCCCTTGCTTGCATACCCTTTCTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCATTTTGAGCCAAGCAGCGACCTCTTTGTCCCCATTGAGAAGAAAGATGTGATCACTTCCACTGTATGTTGGATAGCCATGGCTGCTTTGCTTGTGGGATTATCATTTGTGATTGGTCCTATTCAAATGCTTAAGCTCTATGGAATTCCCTACTTGGTATTTGTCATGTGGTTGGATTTAGTGACTTACTTGCACCATCATGGTCCCGAAGACAAGTTACCATGGTATCGTGGAAAGGAATGGAGTTATCTGAGGGGAGGGCTCACAACACTTGATCGTGATTACGGATTGATCAATAACATTCATCACGATATTGGAACCCATGTGGTCCATCATCTTTTTCCTCAAATCCCTCACTACCATTTAGTTGAAGCAACAGAGGCGGCCAAGCTGGTGTTTGGGAAATATTACAGAGAGCCGAAGAAATCAGGACCTCTACCGTTCCACCTACTCGGAAGTTTTATAACAAGCTTGAAAAAAGACAATTACGTCAGTGACTCTGGGGATGTTGTGTACTACCAAACCGACCCCGAGCTTAGTTCAAAGTAA

Protein Analysis

445

Amino Acids

50.75

Weight (kDa)

9.0

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 138 2.3e-54 Domain of unknown function (DUF3474)
FA_desaturase PF00487 146 - 400 1.1e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1253
AasI GACNNNNNNGTC 2 cut(s) 815, 1277
AccB7I CCANNNNNTGG 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 140
AciI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 4 cut(s) 147, 275, 678, 933
AfaI GTAC 2 cut(s) 585, 1304
AfiI CCNNNNNNNGG 2 cut(s) 480, 593
AflII CTTAAG 1 cut(s) 920
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 9 cut(s) 153, 199, 275, 304, 537, 914, 1160, 1264, 1332
AjnI CCWGG 2 cut(s) 45, 772
AluBI AGCT 9 cut(s) 9, 94, 372, 522, 541, 925, 1180, 1260, 1324
AluI AGCT 9 cut(s) 9, 94, 372, 522, 541, 925, 1180, 1260, 1324
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 1319
AoxI GGCC 4 cut(s) 28, 35, 446, 1173
ApeKI GCWGC 4 cut(s) 410, 416, 804, 872
ApoI RAATTY 4 cut(s) 147, 275, 678, 933
Asp700I GAANNNNTTC 2 cut(s) 116, 523
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 6 cut(s) 45, 67, 196, 282, 323, 611
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 1319
AvaII GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
AxyI CCTNAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 998, 1031
BanII GRGCYC 3 cut(s) 290, 487, 1053
BarI GAAGNNNNNNTAC 2 cut(s) 990, 1022
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 397, 403, 816, 859
BccI CCATC 4 cut(s) 591, 630, 993, 1128
BciT130I CCWGG 2 cut(s) 47, 774
BclI TGATCA 2 cut(s) 840, 1080
BcnI CCSGG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 920
BglII AGATCT 1 cut(s) 124
BisI GCNGC 7 cut(s) 324, 411, 414, 417, 805, 873, 1173
BlsI GCNGC 7 cut(s) 325, 412, 415, 418, 806, 874, 1174
Bme1390I CCNGG 3 cut(s) 47, 285, 774
Bme18I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
BmeT110I CYCGRG 1 cut(s) 1319
BmgT120I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
BmiI GGNNCC 5 cut(s) 14, 354, 472, 994, 1108
BmrFI CCNGG 3 cut(s) 47, 285, 774
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 593
Bse1I ACTGG 1 cut(s) 787
Bse21I CCTNAGG 1 cut(s) 32
BseBI CCWGG 2 cut(s) 47, 774
BseDI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BseGI GGATG 4 cut(s) 391, 602, 661, 1300
BseLI CCNNNNNNNGG 2 cut(s) 480, 593
BseMII CTCAG 3 cut(s) 33, 479, 1031
BseNI ACTGG 1 cut(s) 787
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 4 cut(s) 397, 403, 816, 859
BseYI CCCAGC 1 cut(s) 9
BshFI GGCC 4 cut(s) 30, 37, 448, 1175
BsiHKCI CYCGRG 1 cut(s) 1319
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 3 cut(s) 484, 803, 978
BslI CCNNNNNNNGG 2 cut(s) 480, 593
BsmFI GGGAC 3 cut(s) 484, 803, 978
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 4 cut(s) 30, 37, 448, 1175
BsoBI CYCGRG 1 cut(s) 1319
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 4 cut(s) 193, 290, 487, 1053
Bsp143I GATC 5 cut(s) 124, 280, 840, 1063, 1080
Bsp19I CCATGG 4 cut(s) 356, 631, 867, 1010
BspACI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
BspANI GGCC 4 cut(s) 30, 37, 448, 1175
BspCNI CTCAG 3 cut(s) 32, 478, 1032
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 5 cut(s) 14, 354, 472, 994, 1108
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 787
BssECI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BssMI GATC 5 cut(s) 124, 280, 840, 1063, 1080
BssT1I CCWWGG 4 cut(s) 356, 631, 867, 1010
Bst2UI CCWGG 2 cut(s) 47, 774
Bst4CI ACNGT 3 cut(s) 300, 853, 1230
BstAFI CTTAAG 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 7, 741
BstDEI CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
BstDSI CCRYGG 4 cut(s) 356, 631, 867, 1010
BstF5I GGATG 4 cut(s) 391, 602, 661, 1300
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 127, 283, 843, 1066, 1083
BstMBI GATC 5 cut(s) 124, 280, 840, 1063, 1080
BstMWI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
BstNI CCWGG 2 cut(s) 47, 774
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 45, 283, 772
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 4 cut(s) 397, 403, 816, 859
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 30, 37, 448, 1175
BtgI CCRYGG 4 cut(s) 356, 631, 867, 1010
BtsCI GGATG 4 cut(s) 391, 602, 661, 1300
BtsIMutI CAGTG 2 cut(s) 849, 1288
Cac8I GCNNGC 2 cut(s) 7, 741
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
Csp6I GTAC 2 cut(s) 584, 1303
CviQI GTAC 2 cut(s) 584, 1303
DdeI CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
DpnI GATC 5 cut(s) 126, 282, 842, 1065, 1082
DpnII GATC 5 cut(s) 124, 280, 840, 1063, 1080
DrdI GACNNNNNNGTC 2 cut(s) 815, 1277
DseDI GACNNNNNNGTC 2 cut(s) 815, 1277
EaeI YGGCCR 1 cut(s) 1173
Eco130I CCWWGG 4 cut(s) 356, 631, 867, 1010
Eco147I AGGCCT 1 cut(s) 37
Eco24I GRGCYC 3 cut(s) 290, 487, 1053
Eco47I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 1319
EcoO109I RGGNCCY 3 cut(s) 13, 352, 1220
EcoRI GAATTC 2 cut(s) 275, 933
EcoRII CCWGG 2 cut(s) 45, 772
EcoT14I CCWWGG 4 cut(s) 356, 631, 867, 1010
EcoT38I GRGCYC 3 cut(s) 290, 487, 1053
ErhI CCWWGG 4 cut(s) 356, 631, 867, 1010
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 3 cut(s) 484, 803, 978
FbaI TGATCA 2 cut(s) 840, 1080
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 7 cut(s) 324, 411, 414, 417, 805, 873, 1173
FokI GGATG 4 cut(s) 398, 609, 648, 1307
FriOI GRGCYC 3 cut(s) 290, 487, 1053
Fsp4HI GCNGC 7 cut(s) 324, 411, 414, 417, 805, 873, 1173
GlaI GCGC 1 cut(s) 161
GluI GCNGC 7 cut(s) 324, 411, 414, 417, 805, 873, 1173
GsaI CCCAGC 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 4 cut(s) 30, 37, 448, 1175
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 3 cut(s) 92, 520, 1258
HinfI GANTC 6 cut(s) 72, 132, 240, 616, 653, 1286
HpaII CCGG 1 cut(s) 284
HphI GGTGA 6 cut(s) 45, 67, 196, 282, 323, 611
Hpy166II GTNNAC 4 cut(s) 141, 512, 720, 1303
Hpy188I TCNGA 4 cut(s) 22, 673, 1041, 1244
Hpy188III TCNNGA 5 cut(s) 503, 995, 1067, 1097, 1218
Hpy8I GTNNAC 4 cut(s) 141, 512, 720, 1303
HpyAV CCTTC 3 cut(s) 162, 175, 260
HpyCH4III ACNGT 3 cut(s) 300, 853, 1230
HpyCH4IV ACGT 1 cut(s) 1278
HpyCH4V TGCA 4 cut(s) 106, 568, 743, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
HpyF3I CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
HpySE526I ACGT 1 cut(s) 1278
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 840, 1080
Kzo9I GATC 5 cut(s) 124, 280, 840, 1063, 1080
Lsp1109I GCAGC 4 cut(s) 397, 403, 816, 859
LweI GCATC 1 cut(s) 670
MaeII ACGT 1 cut(s) 1278
MaeIII GTNAC 3 cut(s) 970, 1005, 1283
MalI GATC 5 cut(s) 126, 282, 842, 1065, 1082
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 124, 280, 840, 1063, 1080
MboII GAAGA 8 cut(s) 121, 227, 230, 275, 564, 841, 1010, 1222
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 193, 290, 487, 1053
MluCI AATT 8 cut(s) 147, 275, 305, 532, 603, 678, 933, 1273
MlyI GAGTC 3 cut(s) 249, 610, 1280
MmeI TCCRAC 4 cut(s) 122, 535, 839, 942
MroXI GAANNNNTTC 2 cut(s) 116, 523
MseI TTAA 3 cut(s) 252, 348, 921
MslI CAYNNNNRTG 3 cut(s) 507, 636, 987
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 3 cut(s) 47, 285, 774
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 47, 774
MwoI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 4 cut(s) 356, 631, 867, 1010
NdeII GATC 5 cut(s) 124, 280, 840, 1063, 1080
NlaIV GGNNCC 5 cut(s) 14, 354, 472, 994, 1108
NmuCI GTSAC 2 cut(s) 970, 1283
NspI RCATGY 1 cut(s) 641
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 1 cut(s) 37
PciI ACATGT 1 cut(s) 637
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 116, 523
PfeI GAWTC 3 cut(s) 72, 132, 653
PflMI CCANNNNNTGG 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 7 cut(s) 325, 412, 415, 418, 806, 874, 1174
PleI GAGTC 3 cut(s) 248, 610, 1280
PpsI GAGTC 3 cut(s) 248, 610, 1280
PpuMI RGGWCCY 3 cut(s) 13, 352, 1220
PscI ACATGT 1 cut(s) 637
PsiI TTATAA 1 cut(s) 1253
Psp5II RGGWCCY 3 cut(s) 13, 352, 1220
Psp6I CCWGG 2 cut(s) 45, 772
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 2 cut(s) 45, 772
PspN4I GGNNCC 5 cut(s) 14, 354, 472, 994, 1108
PspPI GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
PspPPI RGGWCCY 3 cut(s) 13, 352, 1220
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 585, 1304
RsaNI GTAC 2 cut(s) 584, 1303
RseI CAYNNNNRTG 3 cut(s) 507, 636, 987
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 252, 348, 921
SatI GCNGC 7 cut(s) 324, 411, 414, 417, 805, 873, 1173
Sau3AI GATC 5 cut(s) 124, 280, 840, 1063, 1080
Sau96I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
SchI GAGTC 3 cut(s) 249, 610, 1280
ScrFI CCNGG 3 cut(s) 47, 285, 774
SduI GDGCHC 4 cut(s) 193, 290, 487, 1053
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
SmiMI CAYNNNNRTG 3 cut(s) 507, 636, 987
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 8 cut(s) 147, 275, 305, 532, 603, 678, 933, 1273
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
SspI AATATT 1 cut(s) 1196
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 45, 283, 772
StyI CCWWGG 4 cut(s) 356, 631, 867, 1010
TaaI ACNGT 3 cut(s) 300, 853, 1230
TaiI ACGT 1 cut(s) 1281
TaqI TCGA 3 cut(s) 140, 279, 527
TasI AATT 8 cut(s) 147, 275, 305, 532, 603, 678, 933, 1273
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 3 cut(s) 326, 416, 1175
TfiI GAWTC 3 cut(s) 72, 132, 653
Tru1I TTAA 3 cut(s) 252, 348, 921
Tru9I TTAA 3 cut(s) 252, 348, 921
TscAI CASTG 2 cut(s) 856, 1288
TseFI GTSAC 2 cut(s) 970, 1283
TseI GCWGC 4 cut(s) 410, 416, 804, 872
Tsp45I GTSAC 2 cut(s) 970, 1283
TspDTI ATGAA 4 cut(s) 276, 443, 666, 1082
TspGWI ACGGA 2 cut(s) 654, 1089
TspRI CASTG 2 cut(s) 856, 1288
Van91I CCANNNNNTGG 1 cut(s) 480
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
XapI RAATTY 4 cut(s) 147, 275, 678, 933
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 3 cut(s) 339, 373, 629
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 2 cut(s) 116, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.