RLG00000024204

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002880
Physical Location & Seq
Reverse (-)
33057937 .. 33064630
6694 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024204

Sequence Viewer

Length: 1116 bp
ATGGCTTCAGAATCCCATGATCAGCTTCACTTTGTTTTGATAACACTAATGTCTCCACGCCACCTTATACCAATGGCAGACATGGCTAAGCTTTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTGGAATCAAACCGATCATTGATCGTGGCATTGATTCCGGTCTCTCCCTTCATCTGGTCCAGTTCAATTTGCCACTTGCTGAGTGTGGTTTGCCAGAGGGATGTGAAACAATGGAATCAGTCCCTGCAAGAAACTTGTTTCGGAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGAAATTGCTTGATACAATGAAACCCCATCCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGCGATTGCTCAAAAGTTTGGGTTACCAAGGTGTTGGTTTGGTGGGACTAGTTGCTTTCCTCTCTTGTCTAACCATAATATAGAAACATCCAAGGTCCTTGAGAGTGTTTCAGGATCAGAACCATTTCTGGTGCCTGGTTTACCTGATGAGATTGAGCTTACTTTAGCCCAATTACCGGCGCACTTGAATCCTGCTAATGTTGACTTCAGAGATTTCCACAGAAAAGTAGAGGAAGCTACAAAAGGATCATGTGGAGTTGTTGTGAATAGCTTTGAGCAGTTGGAAACAGAGTATGTCAAAGAGTATAGAAAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTCATTTGGGTGATCAGCGGGAACAAAACAGTAGAATGGGGAAAATGGTTGTTGGAAGATGGATTTGAGGACAGGATTAAAGGTAGAGGCCTTTTAATCTATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGATTTTTAACACATTGTGGTTGGAATTCGATATTGGAAGCCATATGCGCTGGGATCCCAATGATTACATGGCCTAGGTTTGCTGAGCAGTTCTACAATGAGAAGTTCATAGTGCAAGTCTTGAAGATTGGTGTGAGAGTTGGGGCCGCAGTGGTCATTCCATTGGGGAAACAAGAAGGGTCTGTGGTGTCAGTGAAGAGTAGCGATCGAGTTTAA

Protein Analysis

372

Amino Acids

41.03

Weight (kDa)

6.19

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 213 - 338 7.5e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 529, 862
AciI CCGC 2 cut(s) 771, 1047
AclWI GGATC 4 cut(s) 520, 652, 949, 962
AcsI RAATTY 2 cut(s) 289, 925
AcuI CTGAAG 2 cut(s) 299, 589
AdeI CACNNNGTG 1 cut(s) 917
AfiI CCNNNNNNNGG 3 cut(s) 199, 574, 896
AgsI TTSAA 3 cut(s) 211, 586, 1024
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AluBI AGCT 8 cut(s) 25, 91, 363, 398, 556, 635, 669, 721
AluI AGCT 8 cut(s) 25, 91, 363, 398, 556, 635, 669, 721
Alw26I GTCTC 2 cut(s) 57, 191
AlwI GGATC 4 cut(s) 520, 652, 949, 962
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 4 cut(s) 749, 841, 971, 1044
ApeKI GCWGC 2 cut(s) 363, 398
ApoI RAATTY 2 cut(s) 289, 925
Asp700I GAANNNNTTC 1 cut(s) 522
AspA2I CCTAGG 1 cut(s) 974
AspLEI GCGC 2 cut(s) 580, 950
AspS9I GGNCC 3 cut(s) 202, 493, 1044
AsuHPI GGTGA 2 cut(s) 118, 775
AvaII GGWCC 2 cut(s) 202, 493
AvrII CCTAGG 1 cut(s) 974
BaeGI GKGCMC 1 cut(s) 865
BamHI GGATCC 1 cut(s) 954
BanI GGYRCC 2 cut(s) 529, 862
BbvI GCAGC 2 cut(s) 350, 385
BccI CCATC 2 cut(s) 363, 806
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 2 cut(s) 19, 765
BcoDI GTCTC 2 cut(s) 57, 191
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 447, 975
BfmI CTRYAG 1 cut(s) 891
BisI GCNGC 3 cut(s) 364, 399, 1047
BlnI CCTAGG 1 cut(s) 974
BlpI GCTNAGC 2 cut(s) 87, 984
BlsI GCNGC 3 cut(s) 365, 400, 1048
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 202, 493
BmgT120I GGNCC 3 cut(s) 202, 493, 1044
BmiI GGNNCC 4 cut(s) 531, 864, 956, 1045
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 2 cut(s) 289, 749
Bpu1102I GCTNAGC 2 cut(s) 87, 984
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 389, 425, 489, 974
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 574, 896
Bse118I RCCGGY 2 cut(s) 574, 747
Bse1I ACTGG 2 cut(s) 205, 323
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 4 cut(s) 389, 425, 489, 974
BseGI GGATG 4 cut(s) 251, 355, 485, 886
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 199, 574, 896
BseMII CTCAG 3 cut(s) 216, 387, 975
BseNI ACTGG 2 cut(s) 205, 323
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 2 cut(s) 350, 385
BseYI CCCAGC 1 cut(s) 950
Bsh1285I CGRYCG 1 cut(s) 1108
BshFI GGCC 4 cut(s) 751, 843, 973, 1046
BshNI GGYRCC 2 cut(s) 529, 862
BsiEI CGRYCG 1 cut(s) 1108
BsiSI CCGG 3 cut(s) 183, 575, 748
BslFI GGGAC 2 cut(s) 251, 457
BslI CCNNNNNNNGG 3 cut(s) 199, 574, 896
BsmAI GTCTC 2 cut(s) 57, 191
BsmFI GGGAC 2 cut(s) 251, 457
BsnI GGCC 4 cut(s) 751, 843, 973, 1046
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
Bsp1720I GCTNAGC 2 cut(s) 87, 984
BspACI CCGC 2 cut(s) 771, 1047
BspANI GGCC 4 cut(s) 751, 843, 973, 1046
BspCNI CTCAG 3 cut(s) 217, 386, 976
BspLI GGNNCC 4 cut(s) 531, 864, 956, 1045
BspMAI CTGCAG 1 cut(s) 895
BspPI GGATC 4 cut(s) 520, 652, 949, 962
BspT107I GGYRCC 2 cut(s) 529, 862
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 574, 747
BsrI ACTGG 2 cut(s) 205, 323
BssAI RCCGGY 2 cut(s) 574, 747
BssECI CCNNGG 4 cut(s) 389, 425, 489, 974
BssMI GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
BssT1I CCWWGG 3 cut(s) 425, 489, 974
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 784
Bst6I CTCTTC 1 cut(s) 1091
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 5 cut(s) 87, 225, 373, 733, 984
BstDSI CCRYGG 1 cut(s) 389
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 4 cut(s) 251, 355, 485, 886
BstHHI GCGC 2 cut(s) 580, 950
BstKTI GATC 8 cut(s) 22, 162, 169, 515, 647, 768, 957, 1108
BstMAI GTCTC 2 cut(s) 57, 191
BstMBI GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
BstMCI CGRYCG 1 cut(s) 1108
BstMWI GCNNNNNNNGC 4 cut(s) 83, 319, 404, 947
BstNI CCWGG 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 1 cut(s) 891
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 2 cut(s) 350, 385
BstX2I RGATCY 1 cut(s) 954
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 1 cut(s) 954
BsuRI GGCC 4 cut(s) 751, 843, 973, 1046
BtgI CCRYGG 1 cut(s) 389
BtsCI GGATG 4 cut(s) 251, 355, 485, 886
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 2 cut(s) 1056, 1098
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 2 cut(s) 580, 950
Cfr10I RCCGGY 2 cut(s) 574, 747
Cfr13I GGNCC 3 cut(s) 202, 493, 1044
CspCI CAANNNNNGTGG 2 cut(s) 855, 890
CviAII CATG 5 cut(s) 17, 82, 104, 648, 969
DdeI CTNAG 5 cut(s) 87, 225, 373, 733, 984
DpnI GATC 8 cut(s) 21, 161, 168, 514, 646, 767, 956, 1107
DpnII GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
DraIII CACNNNGTG 1 cut(s) 917
Eam1104I CTCTTC 1 cut(s) 1091
EarI CTCTTC 1 cut(s) 1091
Eco130I CCWWGG 3 cut(s) 425, 489, 974
Eco147I AGGCCT 1 cut(s) 843
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 202, 493
Eco57I CTGAAG 2 cut(s) 299, 589
Eco91I GGTNACC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 425, 489, 974
ErhI CCWWGG 3 cut(s) 425, 489, 974
FaeI CATG 5 cut(s) 20, 85, 107, 651, 972
FaqI GGGAC 2 cut(s) 251, 457
FatI CATG 5 cut(s) 16, 81, 103, 647, 968
FauI CCCGC 1 cut(s) 764
FauNDI CATATG 1 cut(s) 944
FbaI TGATCA 2 cut(s) 19, 765
Fnu4HI GCNGC 3 cut(s) 364, 399, 1047
FokI GGATG 4 cut(s) 258, 342, 472, 873
Fsp4HI GCNGC 3 cut(s) 364, 399, 1047
FspBI CTAG 2 cut(s) 447, 975
GlaI GCGC 2 cut(s) 579, 949
GluI GCNGC 3 cut(s) 364, 399, 1047
GsaI CCCAGC 1 cut(s) 954
HaeIII GGCC 4 cut(s) 751, 843, 973, 1046
HapII CCGG 3 cut(s) 183, 575, 748
HhaI GCGC 2 cut(s) 580, 950
Hin1II CATG 5 cut(s) 20, 85, 107, 651, 972
Hin6I GCGC 2 cut(s) 578, 948
HinP1I GCGC 2 cut(s) 578, 948
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 5 cut(s) 11, 150, 179, 260, 586
HpaII CCGG 3 cut(s) 183, 575, 748
HphI GGTGA 2 cut(s) 118, 775
Hpy166II GTNNAC 3 cut(s) 393, 539, 601
Hpy188I TCNGA 7 cut(s) 10, 288, 318, 360, 376, 517, 608
Hpy188III TCNNGA 2 cut(s) 510, 1021
Hpy8I GTNNAC 3 cut(s) 393, 539, 601
HpyAV CCTTC 2 cut(s) 203, 1070
HpyCH4III ACNGT 1 cut(s) 784
HpyCH4V TGCA 5 cut(s) 272, 302, 366, 893, 1015
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 319, 404, 947
HpyF3I CTNAG 5 cut(s) 87, 225, 373, 733, 984
Hsp92II CATG 5 cut(s) 20, 85, 107, 651, 972
HspAI GCGC 2 cut(s) 578, 948
Ksp22I TGATCA 2 cut(s) 19, 765
Kzo9I GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
Lsp1109I GCAGC 2 cut(s) 350, 385
LweI GCATC 2 cut(s) 289, 749
MaeI CTAG 2 cut(s) 447, 975
MaeIII GTNAC 3 cut(s) 115, 420, 882
MalI GATC 8 cut(s) 21, 161, 168, 514, 646, 767, 956, 1107
MboI GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
MboII GAAGA 3 cut(s) 821, 1036, 1108
MflI RGATCY 1 cut(s) 954
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 6 cut(s) 120, 211, 289, 332, 569, 925
MmeI TCCRAC 3 cut(s) 660, 786, 902
MnlI CCTC 6 cut(s) 146, 235, 468, 622, 814, 833
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 4 cut(s) 831, 848, 908, 1114
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 398, 771
MspI CCGG 3 cut(s) 183, 575, 748
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 83, 319, 404, 947
NdeI CATATG 1 cut(s) 944
NdeII GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
NlaIII CATG 5 cut(s) 20, 85, 107, 651, 972
NlaIV GGNNCC 4 cut(s) 531, 864, 956, 1045
NmuCI GTSAC 2 cut(s) 115, 882
PceI AGGCCT 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 11, 150, 179, 260, 586
PkrI GCNGC 3 cut(s) 365, 400, 1048
Ple19I CGATCG 1 cut(s) 1108
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 532
PspEI GGTNACC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 4 cut(s) 531, 864, 956, 1045
PspPI GGNCC 3 cut(s) 202, 493, 1044
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 954
PvuI CGATCG 1 cut(s) 1108
PvuII CAGCTG 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 4 cut(s) 831, 848, 908, 1114
SatI GCNGC 3 cut(s) 364, 399, 1047
Sau3AI GATC 8 cut(s) 19, 159, 166, 512, 644, 765, 954, 1105
Sau96I GGNCC 3 cut(s) 202, 493, 1044
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 2 cut(s) 289, 749
SfcI CTRYAG 1 cut(s) 891
SinI GGWCC 2 cut(s) 202, 493
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 6 cut(s) 120, 211, 289, 332, 569, 925
SseBI AGGCCT 1 cut(s) 843
SsiI CCGC 2 cut(s) 771, 1047
SspMI CTAG 2 cut(s) 447, 975
StuI AGGCCT 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 532
StyI CCWWGG 3 cut(s) 425, 489, 974
TaaI ACNGT 1 cut(s) 784
TaqI TCGA 2 cut(s) 929, 1108
TasI AATT 6 cut(s) 120, 211, 289, 332, 569, 925
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 5 cut(s) 11, 150, 179, 260, 586
Tru1I TTAA 4 cut(s) 831, 848, 908, 1114
Tru9I TTAA 4 cut(s) 831, 848, 908, 1114
TscAI CASTG 2 cut(s) 1056, 1098
TseFI GTSAC 2 cut(s) 115, 882
TseI GCWGC 2 cut(s) 363, 398
Tsp45I GTSAC 2 cut(s) 115, 882
TspDTI ATGAA 4 cut(s) 185, 362, 745, 997
TspRI CASTG 2 cut(s) 1056, 1098
VpaK11BI GGWCC 2 cut(s) 202, 493
XapI RAATTY 2 cut(s) 289, 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 966
XmaJI CCTAGG 1 cut(s) 974
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 2 cut(s) 447, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.