RchiOBHm_Chr3g0471101

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002880
Physical Location & Seq
Forward (+)
16989805 .. 16990296
492 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43685

Sequence Viewer

Length: 492 bp
ATGTCAAAGAGTATAGAAAGTAACGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAATACAAACTTGGAAAAAGCTCAAAGAGGCAACAAGGACTGCATTGATCAAAACCAGTGCTTGAGATGGCTTGATTCATGGCCTGAGGACTCAGTTGTTTATGCATGTCTTGGAAGCCTTGGCCGTATTGCAACTCCTCAGTTGGTAGAGCTTGGATTAGGCTTAGAAGCATCAAACCGGCCTTTCATTTGGGTGATCAGCGGGAACAAAACAGTAGAATGGGGAAAATGGTTGTTGGAAGATGGATTTGAGGACAGGATTAAAGGTAGAGGCCTTTTAATCCATGGTTGGGCACCACAAGTATTGATATTGTCACATCCTGCAGTTGGTGGATTTTTAACACATTGTGGTTGGAATTCGATATTGGAAGCCATATGCCCTGGGATCCCAATGATTACATGGCCTAGGTTTGCTGAGCAGTTCTACAATGAGTAG

Protein Analysis

163

Amino Acids

18.22

Weight (kDa)

5.38

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 42 - 162 7.5e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 436, 449
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 412
AdeI CACNNNGTG 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 346, 383
AflIII ACRYGT 1 cut(s) 24
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 2 cut(s) 77, 208
AluI AGCT 2 cut(s) 77, 208
AlwI GGATC 2 cut(s) 436, 449
AoxI GGCC 5 cut(s) 137, 178, 236, 328, 458
ApoI RAATTY 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 38
AvrII CCTAGG 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 349
BccI CCATC 2 cut(s) 117, 293
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 2 cut(s) 103, 252
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 378
BlnI CCTAGG 1 cut(s) 461
BlpI GCTNAGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 351, 443
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 383
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 41, 112
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 346, 383
BseMII CTCAG 4 cut(s) 132, 162, 209, 462
BseNI ACTGG 2 cut(s) 41, 112
BseRI GAGGAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 352
BshFI GGCC 5 cut(s) 139, 180, 238, 330, 460
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 346, 383
BsnI GGCC 5 cut(s) 139, 180, 238, 330, 460
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 3 cut(s) 103, 252, 441
Bsp1720I GCTNAGC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 258
BspANI GGCC 5 cut(s) 139, 180, 238, 330, 460
BspCNI CTCAG 4 cut(s) 133, 161, 208, 463
BspLI GGNNCC 2 cut(s) 351, 443
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 436, 449
BspT107I GGYRCC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 2 cut(s) 41, 112
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 5 cut(s) 175, 340, 436, 437, 461
BssMI GATC 3 cut(s) 103, 252, 441
BssT1I CCWWGG 3 cut(s) 175, 340, 461
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 271
BstDEI CTNAG 5 cut(s) 141, 148, 195, 220, 471
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 3 cut(s) 106, 255, 444
BstMBI GATC 3 cut(s) 103, 252, 441
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 5 cut(s) 139, 180, 238, 330, 460
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 48, 119
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 4 cut(s) 135, 162, 341, 456
DdeI CTNAG 5 cut(s) 141, 148, 195, 220, 471
DpnI GATC 3 cut(s) 105, 254, 443
DpnII GATC 3 cut(s) 103, 252, 441
DraIII CACNNNGTG 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 175, 340, 461
Eco147I AGGCCT 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 175, 340, 461
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 3 cut(s) 175, 340, 461
FaeI CATG 4 cut(s) 138, 165, 344, 459
FaiI YATR 8 cut(s) 14, 136, 159, 163, 342, 431, 433, 457
FatI CATG 4 cut(s) 134, 161, 340, 455
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 431
FbaI TGATCA 2 cut(s) 103, 252
FokI GGATG 1 cut(s) 360
FspBI CTAG 1 cut(s) 462
HaeIII GGCC 5 cut(s) 139, 180, 238, 330, 460
HapII CCGG 1 cut(s) 235
Hin1II CATG 4 cut(s) 138, 165, 344, 459
HinfI GANTC 2 cut(s) 131, 146
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 99, 161, 188, 380
HpyF3I CTNAG 5 cut(s) 141, 148, 195, 220, 471
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 138, 165, 344, 459
Ksp22I TGATCA 2 cut(s) 103, 252
Kzo9I GATC 3 cut(s) 103, 252, 441
LpnPI CCDG 8 cut(s) 54, 125, 153, 248, 298, 390, 423, 450
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 20, 45, 369
MalI GATC 3 cut(s) 105, 254, 443
MboI GATC 3 cut(s) 103, 252, 441
MboII GAAGA 1 cut(s) 308
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 78, 273, 389
MnlI CCTC 5 cut(s) 77, 136, 204, 301, 320
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 3 cut(s) 318, 335, 395
MslI CAYNNNNRTG 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
NcoI CCATGG 1 cut(s) 340
NdeI CATATG 1 cut(s) 431
NdeII GATC 3 cut(s) 103, 252, 441
NlaIII CATG 4 cut(s) 138, 165, 344, 459
NlaIV GGNNCC 2 cut(s) 351, 443
NmuCI GTSAC 2 cut(s) 45, 369
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 165
PasI CCCWGGG 1 cut(s) 437
PceI AGGCCT 1 cut(s) 330
PfeI GAWTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 351, 443
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 318, 335, 395
Sau3AI GATC 3 cut(s) 103, 252, 441
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 352
SetI ASST 5 cut(s) 27, 79, 210, 325, 467
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 462
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 3 cut(s) 175, 340, 461
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 416
TasI AATT 1 cut(s) 412
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 318, 335, 395
Tru9I TTAA 3 cut(s) 318, 335, 395
TscAI CASTG 2 cut(s) 48, 119
TseFI GTSAC 2 cut(s) 45, 369
Tsp45I GTSAC 2 cut(s) 45, 369
TspDTI ATGAA 2 cut(s) 123, 232
TspRI CASTG 2 cut(s) 48, 119
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmaJI CCTAGG 1 cut(s) 461
XspI CTAG 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.