Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

15847598 .. 15849284

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTTCAGAGTCCCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCAGGCCACCTTCTACCAATGGCAGACATGGCTAAGCTATTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCTCTCAATGCTGTTGGAATCAAACCTGTCATTGATCGTGCCATTGATTCCGGTCTCTCCCTTCATCTAGTCCAGTTCATTTTGCCACTTGCTGAGTGTGGTTTGCCAGATGGATGTGAAAACTTGGAATCAGTCCCTGCAAGAAACTTGTTTTGTAATTTCTTTGATGCAGTTAGCAGGCTTCAGAAGCCAGTAGAGAAATTGCTTGAGACACTGAAACCCCATCCGAGCTGCATAATCTCAGATAAACATCTGCCGTGGACAGCTGAGATTGCTCAAAAGTTTGGGTTACCAAGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

144

Amino Acids

15.72

Weight (kDa)

5.92

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	25, 91, 363, 398
AluI	AGCT	4 cut(s)	25, 91, 363, 398
Alw26I	GTCTC	3 cut(s)	57, 191, 335
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	236, 363
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	57, 191, 335
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	364
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	205, 323
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	251, 355
BseJI	GATNNNNATC	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	216, 387, 390
BseNI	ACTGG	2 cut(s)	205, 323
BseXI	GCAGC	1 cut(s)	350
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	57, 191, 335
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	19, 166
Bsp1720I	GCTNAGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	3 cut(s)	217, 386, 391
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	205, 323
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	2 cut(s)	19, 166
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	4 cut(s)	87, 225, 373, 399
BstDSI	CCRYGG	1 cut(s)	389
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	251, 355
BstKTI	GATC	2 cut(s)	22, 169
BstMAI	GTCTC	3 cut(s)	57, 191, 335
BstMBI	GATC	2 cut(s)	19, 166
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 319, 404
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	251, 355
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	269
CviAII	CATG	3 cut(s)	17, 82, 104
CviJI	RGCY	9 cut(s)	5, 25, 60, 86, 91, 313, 322, 363, 398
CviKI_1	RGCY	9 cut(s)	5, 25, 60, 86, 91, 313, 322, 363, 398
DdeI	CTNAG	4 cut(s)	87, 225, 373, 399
DpnI	GATC	2 cut(s)	21, 168
DpnII	GATC	2 cut(s)	19, 166
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	420
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	20, 85, 107
FaiI	YATR	4 cut(s)	18, 83, 105, 368
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	16, 81, 103
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	2 cut(s)	258, 342
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	3 cut(s)	20, 85, 107
HinfI	GANTC	4 cut(s)	11, 150, 179, 260
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	10, 318, 360, 376
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	74, 203
HpyCH4V	TGCA	3 cut(s)	272, 302, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 319, 404
HpyF3I	CTNAG	4 cut(s)	87, 225, 373, 399
Hsp92II	CATG	3 cut(s)	20, 85, 107
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 166
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	115, 420
MalI	GATC	2 cut(s)	21, 168
MboI	GATC	2 cut(s)	19, 166
MluCI	AATT	3 cut(s)	120, 289, 332
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	83, 319, 404
NdeII	GATC	2 cut(s)	19, 166
NlaIII	CATG	3 cut(s)	20, 85, 107
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	150, 179, 260
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	398
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	2 cut(s)	19, 166
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	7 cut(s)	27, 66, 93, 136, 160, 365, 400
SfaNI	GCATC	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	120, 289, 332
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	55
TasI	AATT	3 cut(s)	120, 289, 332
TfiI	GAWTC	3 cut(s)	150, 179, 260
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	185, 199
TspRI	CASTG	1 cut(s)	351
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.