Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010073.1

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

26136 .. 27554

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010073.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgtctccagggcacctcataccaatggcagacatggctaagctattggcactacatggtgtggtggtcacaattgtaaccacaccccttaatgccattcggatcaaaccaatcatagatcgtgcgattgattctggtctccctattcatatggtgcagttcagtttgccactccatgagtttggtttgccagagggatgtgaaaacttggattcagttccctcaagaaacttgtttctgaatttctttgatgcagttagcaagctgcatcagtcagtagaacaattgcttgaaacaataaaacccattccaagctgcataatttcagatagaggtctttcatgggcggctgagattgctcagaagtttgggttaccaaggcttttgtttgatgggactaattgctttactcttttgtgtactcataatatacaagcacacaagatcctagacagtgtttcaggctcagacccctttgtggtgcctggtttgcctgatgagattgagcttacttcagcacaattgccggggcacctgaatccttcgtcagatgatttaagagttctccacaaaaagatagagaaagctaaaggggcttttggaattgttgtgaatagctttgaggagttggaaccggaatatttctcagagtatagaaaggttactagtagagtttggagtatcggtccagtgtcactgtccaaccagacagaactggacaaagctcaaagaggagacaaggcctcaattgatgaaaaagaatgcctgaaatggcttgattcatggcctgagaggtctgtggtttatgtatgtcttggaagccttagccgtgtcacgactcttcaattgatagagctaggtttaggcctagaaacttcagactgtccttttgtttgggtgataagcagaaacaattcagaagaatggggaaaatggctgttcgaagatggatttgaggagaggattaaaggaagaggactattaatctatggttgggcaccacaagtattgatattatcacattcttcagtaggtggatttctaacacatggtggttggaattcaacattggaagggatttgtgctgggattcccatgatcacatggcctatgtttgctgagcagttctacaatgagaagttgatagtgcaagtcttgaagattggtgagagagttggggctaatgtgggcattccattggggaaacaagagagctctagggtgttggtgaagagtggtgagtttaaagaggtcatagacaacgtgatgaacaaggaagggaataaagaaggagaagagagaagagagagagcaagaaagcttgcaatgatggcaaagaaagctacagaggagggaggctcttcttaccttaatattagactgttaattgaagatataagactatacaaacacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

472

Amino Acids

52.61

Weight (kDa)

5.73

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	12, 481, 531, 997
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	110, 439
AcsI	RAATTY	2 cut(s)	241, 1060
AcuI	CTGAAG	3 cut(s)	498, 861, 1011
AdeI	CACNNNGTG	1 cut(s)	1052
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	293, 845, 1065, 1159, 1391
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	7, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	1052, 1084
Alw21I	GWGCWC	1 cut(s)	1217
Alw26I	GTCTC	3 cut(s)	9, 143, 729
AlwI	GGATC	2 cut(s)	110, 439
AoxI	GGCC	4 cut(s)	741, 785, 865, 1106
ApeKI	GCWGC	2 cut(s)	265, 315
ApoI	RAATTY	2 cut(s)	241, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	872, 904
AseI	ATTAAT	1 cut(s)	983
Asp700I	GAANNNNTTC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	4 cut(s)	910, 1178, 1240, 1250
AsuII	TTCGAA	1 cut(s)	942
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	3 cut(s)	15, 534, 1000
BanI	GGYRCC	4 cut(s)	12, 481, 531, 997
BanII	GRGCYC	1 cut(s)	1217
Bbv12I	GWGCWC	1 cut(s)	1217
BbvI	GCAGC	2 cut(s)	252, 302
BccI	CCATC	3 cut(s)	386, 941, 1324
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	2 cut(s)	9, 486
BclI	TGATCA	1 cut(s)	1098
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	3 cut(s)	9, 143, 729
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	6 cut(s)	449, 666, 857, 869, 1218, 1417
BfmI	CTRYAG	1 cut(s)	1344
BisI	GCNGC	3 cut(s)	266, 316, 348
BlpI	GCTNAGC	2 cut(s)	39, 1119
BlsI	GCNGC	3 cut(s)	267, 317, 349
Bme1390I	CCNGG	3 cut(s)	9, 486, 528
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	5 cut(s)	14, 483, 533, 633, 999
BmrFI	CCNGG	3 cut(s)	9, 486, 528
BmsI	GCATC	2 cut(s)	241, 277
BplI	GAGNNNNNCTC	2 cut(s)	1343, 1375
Bpu10I	CCTNAGC	1 cut(s)	824
Bpu1102I	GCTNAGC	2 cut(s)	39, 1119
Bpu14I	TTCGAA	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	8, 377, 527
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	689, 720
Bse3DI	GCAATG	1 cut(s)	1332
BseBI	CCWGG	2 cut(s)	9, 486
BseDI	CCNNGG	3 cut(s)	8, 377, 527
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	1332
BseMII	CTCAG	6 cut(s)	342, 374, 480, 660, 780, 1110
BseNI	ACTGG	2 cut(s)	689, 720
BseRI	GAGGAG	4 cut(s)	638, 747, 971, 1364
BseSI	GKGCMC	3 cut(s)	15, 534, 1000
BseXI	GCAGC	2 cut(s)	252, 302
BseYI	CCCAGC	1 cut(s)	1085
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	4 cut(s)	743, 787, 867, 1108
BshNI	GGYRCC	4 cut(s)	12, 481, 531, 997
BsiHKAI	GWGCWC	1 cut(s)	1217
BsiSI	CCGG	2 cut(s)	527, 635
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	3 cut(s)	9, 143, 729
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	2 cut(s)	767, 1191
BsnI	GGCC	4 cut(s)	743, 787, 867, 1108
Bso31I	GGTCTC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	942
Bsp1286I	GDGCHC	4 cut(s)	15, 534, 1000, 1217
Bsp143I	GATC	4 cut(s)	102, 118, 444, 1098
Bsp1720I	GCTNAGC	2 cut(s)	39, 1119
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	4 cut(s)	743, 787, 867, 1108
BspCNI	CTCAG	6 cut(s)	343, 373, 479, 659, 781, 1111
BspLI	GGNNCC	5 cut(s)	14, 483, 533, 633, 999
BspPI	GGATC	2 cut(s)	110, 439
BspQI	GCTCTTC	1 cut(s)	1366
BspT104I	TTCGAA	1 cut(s)	942
BspT107I	GGYRCC	4 cut(s)	12, 481, 531, 997
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	1332
BsrI	ACTGG	2 cut(s)	689, 720
BssECI	CCNNGG	3 cut(s)	8, 377, 527
BssMI	GATC	4 cut(s)	102, 118, 444, 1098
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	9, 486
Bst4CI	ACNGT	4 cut(s)	455, 699, 884, 1383
Bst6I	CTCTTC	6 cut(s)	846, 967, 1226, 1290, 1297, 1366
BstBI	TTCGAA	1 cut(s)	942
BstC8I	GCNNGC	2 cut(s)	263, 1323
BstDEI	CTNAG	8 cut(s)	39, 351, 360, 466, 646, 789, 824, 1119
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	4 cut(s)	105, 121, 447, 1101
BstMAI	GTCTC	3 cut(s)	9, 143, 729
BstMBI	GATC	4 cut(s)	102, 118, 444, 1098
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 356, 490, 593, 1331, 1340
BstNI	CCWGG	2 cut(s)	9, 486
BstPI	GGTNACC	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	7, 484, 526
BstSFI	CTRYAG	1 cut(s)	1344
BstSLI	GKGCMC	3 cut(s)	15, 534, 1000
BstV1I	GCAGC	2 cut(s)	252, 302
BstX2I	RGATCY	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	743, 787, 867, 1108
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	3 cut(s)	460, 695, 696
Cac8I	GCNNGC	2 cut(s)	263, 1323
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	990, 1025
CviAII	CATG	8 cut(s)	34, 56, 176, 342, 783, 1049, 1096, 1104
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	8 cut(s)	39, 351, 360, 466, 646, 789, 824, 1119
DpnI	GATC	4 cut(s)	104, 120, 446, 1100
DpnII	GATC	4 cut(s)	102, 118, 444, 1098
DraI	TTTAAA	1 cut(s)	1246
DraIII	CACNNNGTG	1 cut(s)	1052
Eam1104I	CTCTTC	6 cut(s)	846, 967, 1226, 1290, 1297, 1366
EarI	CTCTTC	6 cut(s)	846, 967, 1226, 1290, 1297, 1366
Ecl136II	GAGCTC	1 cut(s)	1215
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	2 cut(s)	743, 867
Eco24I	GRGCYC	1 cut(s)	1217
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	1215
Eco57I	CTGAAG	3 cut(s)	498, 861, 1011
Eco91I	GGTNACC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	1215
EcoO65I	GGTNACC	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	7, 484
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	1217
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	8 cut(s)	37, 59, 179, 345, 786, 1052, 1099, 1107
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	8 cut(s)	33, 55, 175, 341, 782, 1048, 1095, 1103
FauNDI	CATATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	1098
Fnu4HI	GCNGC	3 cut(s)	266, 316, 348
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	1217
Fsp4HI	GCNGC	3 cut(s)	266, 316, 348
FspBI	CTAG	6 cut(s)	449, 666, 857, 869, 1218, 1417
GluI	GCNGC	3 cut(s)	266, 316, 348
GsaI	CCCAGC	1 cut(s)	1089
HaeIII	GGCC	4 cut(s)	743, 787, 867, 1108
HapII	CCGG	2 cut(s)	527, 635
Hin1II	CATG	8 cut(s)	37, 59, 179, 345, 786, 1052, 1099, 1107
HindIII	AAGCTT	1 cut(s)	1319
HinfI	GANTC	6 cut(s)	131, 212, 538, 779, 838, 1090
HpaII	CCGG	2 cut(s)	527, 635
HphI	GGTGA	4 cut(s)	910, 1178, 1240, 1250
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	9 cut(s)	102, 240, 328, 363, 469, 550, 649, 880, 919
Hpy188III	TCNNGA	3 cut(s)	225, 835, 1156
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	4 cut(s)	552, 1067, 1271, 1283
HpyCH4III	ACNGT	4 cut(s)	455, 699, 884, 1383
HpyCH4IV	ACGT	1 cut(s)	1263
HpyCH4V	TGCA	6 cut(s)	157, 254, 268, 318, 1150, 1325
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 356, 490, 593, 1331, 1340
HpyF3I	CTNAG	8 cut(s)	39, 351, 360, 466, 646, 789, 824, 1119
HpySE526I	ACGT	1 cut(s)	1263
Hsp92II	CATG	8 cut(s)	37, 59, 179, 345, 786, 1052, 1099, 1107
Ksp22I	TGATCA	1 cut(s)	1098
Kzo9I	GATC	4 cut(s)	102, 118, 444, 1098
LguI	GCTCTTC	1 cut(s)	1366
Lsp1109I	GCAGC	2 cut(s)	252, 302
LweI	GCATC	2 cut(s)	241, 277
MaeI	CTAG	6 cut(s)	449, 666, 857, 869, 1218, 1417
MaeII	ACGT	1 cut(s)	1263
MaeIII	GTNAC	6 cut(s)	67, 76, 372, 661, 693, 832
MalI	GATC	4 cut(s)	104, 120, 446, 1100
MboI	GATC	4 cut(s)	102, 118, 444, 1098
MfeI	CAATTG	5 cut(s)	72, 284, 521, 747, 845
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	4 cut(s)	15, 534, 1000, 1217
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	3 cut(s)	609, 726, 1037
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	7 cut(s)	90, 557, 966, 983, 1245, 1371, 1385
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	527, 635
MspR9I	CCNGG	3 cut(s)	9, 486, 528
MunI	CAATTG	5 cut(s)	72, 284, 521, 747, 845
Mva1269I	GAATGC	2 cut(s)	767, 1191
MvaI	CCWGG	2 cut(s)	9, 486
MwoI	GCNNNNNNNGC	6 cut(s)	35, 356, 490, 593, 1331, 1340
NciI	CCSGG	1 cut(s)	528
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	4 cut(s)	102, 118, 444, 1098
NlaIII	CATG	8 cut(s)	37, 59, 179, 345, 786, 1052, 1099, 1107
NlaIV	GGNNCC	5 cut(s)	14, 483, 533, 633, 999
NmuCI	GTSAC	3 cut(s)	67, 693, 832
NspV	TTCGAA	1 cut(s)	942
PceI	AGGCCT	2 cut(s)	743, 867
PciSI	GCTCTTC	1 cut(s)	1366
PctI	GAATGC	2 cut(s)	767, 1191
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	5 cut(s)	131, 212, 538, 779, 1090
PkrI	GCNGC	3 cut(s)	267, 317, 349
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PshBI	ATTAAT	1 cut(s)	983
Psp124BI	GAGCTC	1 cut(s)	1217
Psp6I	CCWGG	2 cut(s)	7, 484
PspEI	GGTNACC	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	1085
PspGI	CCWGG	2 cut(s)	7, 484
PspN4I	GGNNCC	5 cut(s)	14, 483, 533, 633, 999
PspPI	GGNCC	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	1217
SapI	GCTCTTC	1 cut(s)	1366
SaqAI	TTAA	7 cut(s)	90, 557, 966, 983, 1245, 1371, 1385
SatI	GCNGC	3 cut(s)	266, 316, 348
Sau3AI	GATC	4 cut(s)	102, 118, 444, 1098
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	3 cut(s)	9, 486, 528
SduI	GDGCHC	4 cut(s)	15, 534, 1000, 1217
SfaNI	GCATC	2 cut(s)	241, 277
SfcI	CTRYAG	1 cut(s)	1344
SfuI	TTCGAA	1 cut(s)	942
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SpeI	ACTAGT	1 cut(s)	665
SseBI	AGGCCT	2 cut(s)	743, 867
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	2 cut(s)	641, 1375
SspMI	CTAG	6 cut(s)	449, 666, 857, 869, 1218, 1417
SstI	GAGCTC	1 cut(s)	1217
StuI	AGGCCT	2 cut(s)	743, 867
StyD4I	CCNGG	3 cut(s)	7, 484, 526
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	4 cut(s)	455, 699, 884, 1383
TaiI	ACGT	1 cut(s)	1266
TaqI	TCGA	1 cut(s)	942
TaqII	GACCGA	1 cut(s)	674
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	5 cut(s)	131, 212, 538, 779, 1090
Tru1I	TTAA	7 cut(s)	90, 557, 966, 983, 1245, 1371, 1385
Tru9I	TTAA	7 cut(s)	90, 557, 966, 983, 1245, 1371, 1385
TscAI	CASTG	3 cut(s)	460, 696, 702
TseFI	GTSAC	3 cut(s)	67, 693, 832
TseI	GCWGC	2 cut(s)	265, 315
Tsp45I	GTSAC	3 cut(s)	67, 693, 832
TspDTI	ATGAA	5 cut(s)	137, 330, 768, 771, 1283
TspRI	CASTG	3 cut(s)	460, 696, 702
VpaK11BI	GGWCC	1 cut(s)	686
VspI	ATTAAT	1 cut(s)	983
XapI	RAATTY	2 cut(s)	241, 1060
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	6 cut(s)	449, 666, 857, 869, 1218, 1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.