Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002880

Physical Location & Seq

Genomic Coordinates Forward (+)

28979393 .. 28981096

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG145400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTCAAAAAGCAACGCTACGTGGTTATATATCATTTCTTCATCCAAGATTTGGACACCTCTGGTTCAGTATACTCTTTCTCTCTGGCAACTGCAATTGCAATGGCTTCAGAGTCTCATGATCAGCTTCACTTTGTTTTGATACCGCTAATGTCTCCGGGCCACCTTCTACCAATGACAGACATGGCTAAGGTGTTGGCACAGCATGGCCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTCGAATCAAACCGATGATTGATCGCGCCATTGATTCCGGTCTCTCCCTTCATCTAGTTCAGTTTAGTTTGCCACTTGCTGAGTGTGGCCTCCCAGAAGGATGTGAAAACATGGACGCAGTCCCTGCAAACTTGTTTTGGAATTTCATTGAGGCAGTACCATTTGAGGCACGTACTCTCTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

5.55

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17070
malus_domestica	MD00G1108400.v1.1
prunus_persica	Prupe.7G124100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471091 RchiOBHm_Chr3g0471101 RchiOBHm_Chr3g0471111 RchiOBHm_Chr3g0471121 RchiOBHm_Chr4g0408861
rosa_laevigata	RLG00000008618 RLG00000024203 RLG00000024204 RLG00000024222 RLG00000024223
rosa_multiflora	Rmu_co8494709.1_g000001 Rmu_sc0001855.1_g000010 Rmu_sc0002012.1_g000008 Rmu_sc0002012.1_g000009 Rmu_sc0010073.1_g000003 Rmu_sc0010073.1_g000005 Rmu_sc0010073.1_g000007 Rmu_sc0013102.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410290 Rroxscaffold_6G00410300
rosa_rugosa	Rorug03G0115300 Rorug03G0115400 Rorug04G0088300 Rorug04G0088300
rosa_samantha	Rh3AG164500 Rh3CG180100 Rh3CG180200 Rh3CG180300 Rh3CG180400 Rh3DG185800 Rh3DG186000 Rh4AG152100 Rh4DG145400
rosa_wichuraiana	Rw3G015520 Rw4G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	273
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	405, 421
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	3 cut(s)	120, 159, 293
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	160, 208, 334
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	120, 159, 293
BfaI	CTAG	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	159, 212
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	159, 212
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	2 cut(s)	22, 419
BsaI	GGTCTC	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	42, 353
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	162, 210, 336
BsiSI	CCGG	2 cut(s)	158, 285
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	120, 159, 293
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	162, 210, 336
Bso31I	GGTCTC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	121, 268
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	3 cut(s)	162, 210, 336
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	108
BssMI	GATC	2 cut(s)	121, 268
BssNAI	GTATAC	1 cut(s)	73
Bst1107I	GTATAC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	2 cut(s)	22, 419
BstBI	TTCGAA	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	189, 327
BstF5I	GGATG	2 cut(s)	42, 353
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	124, 271
BstMAI	GTCTC	3 cut(s)	120, 159, 293
BstMBI	GATC	2 cut(s)	121, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	157, 210
BstUI	CGCG	1 cut(s)	273
BstZ17I	GTATAC	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	162, 210, 336
BtsCI	GGATG	2 cut(s)	42, 353
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	404, 420
CviAII	CATG	4 cut(s)	119, 184, 206, 358
CviJI	RGCY	7 cut(s)	107, 127, 162, 188, 210, 336, 430
CviKI_1	RGCY	7 cut(s)	107, 127, 162, 188, 210, 336, 430
CviQI	GTAC	2 cut(s)	404, 420
DdeI	CTNAG	2 cut(s)	189, 327
DpnI	GATC	2 cut(s)	123, 270
DpnII	GATC	2 cut(s)	121, 268
Eco31I	GGTCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	122, 187, 209, 361
FaiI	YATR	7 cut(s)	29, 31, 73, 120, 185, 207, 359
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	4 cut(s)	118, 183, 205, 357
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	2 cut(s)	29, 360
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	162, 210, 336
HapII	CCGG	2 cut(s)	158, 285
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	122, 187, 209, 361
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	113, 252, 281
HpaII	CCGG	2 cut(s)	158, 285
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	176, 305, 338
HpyCH4IV	ACGT	2 cut(s)	21, 418
HpyCH4V	TGCA	3 cut(s)	95, 101, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	189, 327
HpySE526I	ACGT	2 cut(s)	21, 418
Hsp92II	CATG	4 cut(s)	122, 187, 209, 361
HspAI	GCGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 268
LpnPI	CCDG	9 cut(s)	48, 71, 171, 197, 224, 298, 354, 384, 412
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	21, 418
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	123, 270
MboI	GATC	2 cut(s)	121, 268
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	3 cut(s)	96, 222, 388
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	70, 248, 347, 391, 406
MseI	TTAA	1 cut(s)	433
MspI	CCGG	2 cut(s)	158, 285
MspR9I	CCNGG	2 cut(s)	159, 212
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	121, 268
NlaIII	CATG	4 cut(s)	122, 187, 209, 361
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	250
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	252, 281
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	52
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	2 cut(s)	22, 419
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	371
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	2 cut(s)	405, 421
RsaNI	GTAC	2 cut(s)	404, 420
SaqAI	TTAA	1 cut(s)	433
Sau3AI	GATC	2 cut(s)	121, 268
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	159, 212
SetI	ASST	6 cut(s)	24, 62, 129, 168, 195, 421
SfuI	TTCGAA	1 cut(s)	250
Sse9I	AATT	3 cut(s)	96, 222, 388
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	157, 210
TaiI	ACGT	2 cut(s)	24, 421
TaqI	TCGA	1 cut(s)	250
TasI	AATT	3 cut(s)	96, 222, 388
TfiI	GAWTC	2 cut(s)	252, 281
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	31, 287, 382
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.