Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

25501817 .. 25508734

Gene Structure 6918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32451.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCATCCTGCACAGTTTTCTCACTTCCTGGCTATTTTGGCTTTGATCTTGGCACGCTTGCAGACTTGTATGACTTTGACCAAATCGACAGCCCTACTGTTCTTCAACTCATCACACAGATTGTCTATGGCCGGATCTCCAATGCCACAGTAATTCTCAGTCGGGATCTTAGCAACCGTTCCAGCTTCTGTGTAAAAGACCCCAACCCAGCCTCAGATTGTGACAGTCTAAAGATTTTGGCCATCTTATGCAACCCTAAGTGGGCTTTGGTGGCATTTGTGATTGCAAATCCTGAAAGGTACTCTGGAGTATGGCTAATAACTCGTTGTGGGAGGCTTTTGAAAAATGGCTATGATCTCCATGATTGGAAGTTTTGTATAACTGTTTTGATCATCACTGGTTTAGTTAGTCGTGTGATTGCATTCTTTTCTATGCTGATCTTTCAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

152

Amino Acids

16.91

Weight (kDa)

8.23

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	73 - 151	2.6e-30	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	143, 174
AcoI	YGGCCR	2 cut(s)	130, 240
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	107, 343
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AlwI	GGATC	2 cut(s)	143, 174
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	2 cut(s)	130, 240
BalI	TGGCCA	1 cut(s)	242
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	172, 228
BseNI	ACTGG	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	2 cut(s)	132, 242
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	132, 242
Bsp143I	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
BspANI	GGCC	2 cut(s)	132, 242
BspCNI	CTCAG	2 cut(s)	171, 227
BspPI	GGATC	2 cut(s)	143, 174
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	6 cut(s)	16, 100, 151, 179, 227, 385
BstC8I	GCNNGC	2 cut(s)	56, 60
BstDEI	CTNAG	4 cut(s)	158, 170, 214, 258
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	6 cut(s)	49, 138, 169, 358, 393, 441
BstMBI	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 272
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	135, 166
BstYI	RGATCY	2 cut(s)	135, 166
BsuRI	GGCC	2 cut(s)	132, 242
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	56, 60
CaiI	CAGNNNCTG	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	4 cut(s)	158, 170, 214, 258
DpnI	GATC	6 cut(s)	48, 137, 168, 357, 392, 440
DpnII	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
EaeI	YGGCCR	2 cut(s)	130, 240
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	365
FaiI	YATR	8 cut(s)	72, 129, 250, 313, 354, 363, 380, 434
FatI	CATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	132, 242
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	1 cut(s)	365
HpaII	CCGG	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	217, 447
Hpy188III	TCNNGA	3 cut(s)	164, 293, 306
HpyCH4III	ACNGT	6 cut(s)	16, 100, 151, 179, 227, 385
HpyCH4V	TGCA	5 cut(s)	12, 62, 252, 287, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 272
HpyF3I	CTNAG	4 cut(s)	158, 170, 214, 258
Hsp92II	CATG	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
LpnPI	CCDG	9 cut(s)	15, 22, 42, 146, 196, 222, 291, 306, 384
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	6 cut(s)	48, 137, 168, 357, 392, 440
MboI	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	2 cut(s)	135, 166
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	1 cut(s)	153
MluNI	TGGCCA	1 cut(s)	242
MnlI	CCTC	2 cut(s)	223, 327
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	39, 272
NdeII	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
NlaIII	CATG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	221
PctI	GAATGC	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	135, 166
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
Sau3AI	GATC	6 cut(s)	46, 135, 166, 355, 390, 438
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	2 cut(s)	188, 302
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	6 cut(s)	16, 100, 151, 179, 227, 385
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	153
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspRI	CASTG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.